View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11027_low_6 (Length: 466)
Name: NF11027_low_6
Description: NF11027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11027_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 32865571 - 32865205
Alignment:
| Q |
18 |
attacctatgcatatcaataaaaacaacaattagcctttatatatttttaaaaaagaaagatgttaaattgttaattgtataatgatttttacagtaact |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32865571 |
attacctatgcatatcaataaaaaccacaattagcctttatatatttttaaaaaagaaagatgttaaattgttaattgtataatgatttttacagtaact |
32865472 |
T |
|
| Q |
118 |
atttttaaaaatttcaacatacaatcannnnnnnggtatgaaaactattttaaaatattaaatgatttttatctttccacctacaaacaacaaccgcctt |
217 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32865471 |
atttttaaaaatttcaacatacaatcatttttttggtatgaaaactattttaaaatattaaatgatttttatgtttccacctacaaacaacaaccgcctt |
32865372 |
T |
|
| Q |
218 |
cctacatcaccgtcctctcctccccttcacatccaaacaacaaccgcatcgatgtagatgcttgctgtggtggtgcgatgcctttcatggccgcatcacc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32865371 |
cctacatcaccgtcctctcctccccttcacatccaaacaacaaccgcatcgatgtagatgcttgctgtggtggtgcgatgcctttcatggccgcattacc |
32865272 |
T |
|
| Q |
318 |
gttctccccttttttcctccggcaaccctccttccgacgtttctctcctcttccgtcgccgttcgtc |
384 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32865271 |
gttctccccttttttcctccggcgaccctccttccgacgtttctctcctcttccgccgccgttcgtc |
32865205 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 192 - 384
Target Start/End: Complemental strand, 42237386 - 42237194
Alignment:
| Q |
192 |
ttccacctacaaacaacaaccgccttcctacatcaccgtcctctcctccccttcacatccaaacaacaaccgcatcgatgtagatgcttgctgtggtggt |
291 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
42237386 |
ttccacctacaaacaacaaccgccttcctacatcaccgtcctctcctccccttcacatccaaacaacaaccgcatagatgtagatgcttgttgtggtggt |
42237287 |
T |
|
| Q |
292 |
gcgatgcctttcatggccgcatcaccgttctccccttttttcctccggcaaccctccttccgacgtttctctcctcttccgtcgccgttcgtc |
384 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42237286 |
gcgatgcctttcatggcagcatcaccgttctccccttttttcctccgacgaccctccttccgacgtttctctcctcttccgtcgtcgttcgtc |
42237194 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 7e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 195 - 384
Target Start/End: Original strand, 35246818 - 35247007
Alignment:
| Q |
195 |
cacctacaaacaacaaccgccttcctacatcaccgtcctctcctccccttcacatccaaacaacaaccgcatcgatgtagatgcttgctgtggtggtgcg |
294 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
35246818 |
cacctacaaacaacaatcgtcttcctacatcaccctcctctcctccccttcacatccaaacaacaaccgcatcgatgtagatgcttgctgtggtggtgtg |
35246917 |
T |
|
| Q |
295 |
atgcctttcatggccgcatcaccgttctccccttttttcctccggcaaccctccttccgacgtttctctcctcttccgtcgccgttcgtc |
384 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
35246918 |
atgcctttcatggccgcatcactgttctccccttttttcctccagcgaccctccttccgaagtttctctcctcttccgtcgccgttcgtc |
35247007 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 192 - 316
Target Start/End: Original strand, 21747229 - 21747353
Alignment:
| Q |
192 |
ttccacctacaaacaacaaccgccttcctacatcaccgtcctctcctccccttcacatccaaacaacaaccgcatcgatgtagatgcttgctgtggtggt |
291 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
21747229 |
ttccacctacaaacaacaactgtcttcctacatcaccgtcctctcctccccttcacatccaaacaacaaccacatcgatgtagatgcttgctgtggtggt |
21747328 |
T |
|
| Q |
292 |
gcgatgcctttcatggccgcatcac |
316 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
21747329 |
gcgatgcctttcatggccgcatcac |
21747353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 20490750 - 20490639
Alignment:
| Q |
218 |
cctacatcaccgtcctctcctccccttcacatccaaacaacaaccgcatcgatgtagatgcttgctgtggtggtgcgatgcctttcatggccgcatcacc |
317 |
Q |
| |
|
||||||||||| |||| ||||| ||||||||||||| ||| |||||||||||||||||||||||||| |||||| ||| |||||||| | ||| |||| |
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| T |
20490750 |
cctacatcaccaacctcacctcctcttcacatccaaaaaactaccgcatcgatgtagatgcttgctgttatggtgcaatgtctttcatgactgcaccacc |
20490651 |
T |
|
| Q |
318 |
gttctccccttt |
329 |
Q |
| |
|
|||||||||||| |
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|
| T |
20490650 |
gttctccccttt |
20490639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 269 - 376
Target Start/End: Original strand, 27899710 - 27899816
Alignment:
| Q |
269 |
atgtagatgcttgctgtggtggtgcgatgcctttcatggccgcatcaccgttctccccttttttcctccggcaaccctccttccgacgtttctctcctct |
368 |
Q |
| |
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||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| |||||||| ||||| |||| |
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| T |
27899710 |
atgtagatgtttgttgtggtggtgcgatgcctttcatggccgcattaccgttctcccc-cttttcctccggagaccctccatccgacgtctctcttctct |
27899808 |
T |
|
| Q |
369 |
tccgtcgc |
376 |
Q |
| |
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| |||||| |
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|
| T |
27899809 |
ttcgtcgc |
27899816 |
T |
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