View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11027_low_7 (Length: 458)

Name: NF11027_low_7
Description: NF11027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11027_low_7
NF11027_low_7
[»] chr3 (6 HSPs)
chr3 (1-449)||(11021617-11022065)
chr3 (78-228)||(10531147-10531297)
chr3 (78-165)||(10680009-10680096)
chr3 (78-168)||(13852894-13852984)
chr3 (72-164)||(10503132-10503224)
chr3 (67-148)||(11779404-11779485)
[»] chr8 (3 HSPs)
chr8 (71-168)||(44955085-44955182)
chr8 (77-168)||(11487575-11487666)
chr8 (250-296)||(6290209-6290255)
[»] chr7 (2 HSPs)
chr7 (251-383)||(6350692-6350824)
chr7 (273-353)||(11908017-11908097)
[»] chr4 (1 HSPs)
chr4 (76-162)||(17850357-17850443)
[»] chr2 (2 HSPs)
chr2 (261-353)||(35081986-35082078)
chr2 (71-156)||(26909446-26909531)


Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 11022065 - 11021617
Alignment:
Q  1 atctgctacattttagagtgatatttatcttttagagaatcctctatgtttaactttagacattcaagaaacaactcttcaagagcagtgagtgtgtcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11022065 atctgctacattttggagtgatatttatcttttagagaatcctctatgtttaactttagacattcaagaaacaactcttcaagagcagtgagtgtgtcca 11021966  T
Q  101 tccgaacattgactttaagtgattcaattgagtcatgggatatgattttaagtgatcggaggcttgactgattacgtagaggattctctttaataaaaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11021965 tccgaacattgactttaagtgattcaattgagtcatgggatatgattttaagtgatcggaggcttgactgattacgtagaggattctctttaataaaaac 11021866  T
Q  201 cgaatctagactcctacaatcacaaatggttaggctttgttgcacagggtgttaagaatggaagaagatggaagattacttgaggagcaagtaacctgac 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11021865 cgaatctagactcctacaatcacaaatggttaggctttgttgcacatggtgttaagaatggaagaagatggaagattacttgaggagcaagtaacctgac 11021766  T
Q  301 atagctctaacaaacttgccacgcaagcttgctttctgctatgacagttagagttagttttgataggatgtagttagtgtatgattgttaagctgtacct 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  11021765 atagctctaacaaacttgccacgcaagcttgctttctgctatgacagttagagttagtttagataggatggagttagtgtatgattgttaagctgtacct 11021666  T
Q  401 atgttagtctataaataagtgcttaacctttattcacttcatctcactc 449  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11021665 atgttagtctataaataagtgcttaacctttattcacttcatttcactc 11021617  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 78 - 228
Target Start/End: Complemental strand, 10531297 - 10531147
Alignment:
Q  78 ttcaagagcagtgagtgtgtccatccgaacattgactttaagtgattcaattgagtcatgggatatgattttaagtgatcggaggcttgactga-ttacg 176  Q
    ||||||||||||||| |||||||||||||  |||||||||||  || ||||||| ||||||||| ||||||||||||||||||||||||| |||   |||    
T  10531297 ttcaagagcagtgagcgtgtccatccgaagcttgactttaagcaatccaattgaatcatgggatttgattttaagtgatcggaggcttga-tgaccgacg 10531199  T
Q  177 tagaggattctctttaataaaaaccgaatctagactcctacaatcacaaatg 228  Q
    | ||||| | |||  ||||||||||||||| | ||||||||||  |||||||    
T  10531198 tggaggactttctgaaataaaaaccgaatccatactcctacaaaaacaaatg 10531147  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 78 - 165
Target Start/End: Complemental strand, 10680096 - 10680009
Alignment:
Q  78 ttcaagagcagtgagtgtgtccatccgaacattgactttaagtgattcaattgagtcatgggatatgattttaagtgatcggaggctt 165  Q
    ||||||||||||||| |||||||||||||  |||||||||||   | ||||||| ||||| ||| |||||||||||||| ||||||||    
T  10680096 ttcaagagcagtgagcgtgtccatccgaagcttgactttaagcagtccaattgaatcatgtgatttgattttaagtgattggaggctt 10680009  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 13852894 - 13852984
Alignment:
Q  78 ttcaagagcagtgagtgtgtccatccgaacattgactttaagtgattcaattgagtcatgggatatgattttaagtgatcggaggcttgac 168  Q
    ||||||||| || || |||||||||||||  || |||||||||||| ||||||||||||||||| |||||  ||||| | |||| ||||||    
T  13852894 ttcaagagcggtaagcgtgtccatccgaagcttcactttaagtgatccaattgagtcatgggatttgattacaagtgtttggagtcttgac 13852984  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 10503224 - 10503132
Alignment:
Q  72 caactcttcaagagcagtgagtgtgtccatccgaacattgactttaagtgattcaattgagtcatgggatatgattttaagtgatcggaggct 164  Q
    ||||||||||||||| ||||| |||| |||| |||  ||||||| || |||||||| ||| |||||||||  ||| | ||||||| |||||||    
T  10503224 caactcttcaagagccgtgagcgtgttcatctgaagcttgacttcaaatgattcaactgaatcatgggattggatatgaagtgattggaggct 10503132  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 148
Target Start/End: Original strand, 11779404 - 11779485
Alignment:
Q  67 agaaacaactcttcaagagcagtgagtgtgtccatccgaacattgactttaagtgattcaattgagtcatgggatatgattt 148  Q
    ||||||||||  |||||||||||||| | || ||||||||  ||||||||||   |||||||| | ||||||||| ||||||    
T  11779404 agaaacaacttctcaagagcagtgagcgagttcatccgaagcttgactttaaacaattcaattaaatcatgggatctgattt 11779485  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 44955085 - 44955182
Alignment:
Q  71 acaactcttcaagagcagtgagtgtgtccatccgaacattgactttaagtgattcaattgagtcatgggatatgattttaagtgatcggaggcttgac 168  Q
    ||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||  ||||||||||| ||||| |||||||||  |||||||||    
T  44955085 acaactcttcaagagcagtaagtgtatccatccgaagattgactttaagtgattcaataaagtcatgggatgtgattgtaagtgatcaaaggcttgac 44955182  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 77 - 168
Target Start/End: Complemental strand, 11487666 - 11487575
Alignment:
Q  77 cttcaagagcagtgagtgtgtccatccgaacattgactttaagtgattcaattgagtcatgggatatgattttaagtgatcggaggcttgac 168  Q
    ||||||||||||||||  ||||||||||||  ||||||| ||||||| ||||||||||||||||| |||||| ||| |||||||||||||||    
T  11487666 cttcaagagcagtgagcatgtccatccgaagtttgacttgaagtgatccaattgagtcatgggatttgatttcaagagatcggaggcttgac 11487575  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 250 - 296
Target Start/End: Complemental strand, 6290255 - 6290209
Alignment:
Q  250 tgttaagaatggaagaagatggaagattacttgaggagcaagtaacc 296  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||    
T  6290255 tgttaagaatggaagaagaaggaagattacttgaggagcaagcaacc 6290209  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 251 - 383
Target Start/End: Original strand, 6350692 - 6350824
Alignment:
Q  251 gttaagaatggaagaagatggaagattacttgaggagcaagtaacctgacatagctctaacaaacttgccacgcaagcttgctttctgctatgacagtta 350  Q
    |||||||||||||||||| | ||||||||||||| |||||||||| ||||||||||||||| ||||||||||  ||||||   ||||| |||| ||||||    
T  6350692 gttaagaatggaagaagaagaaagattacttgagaagcaagtaacttgacatagctctaactaacttgccacataagcttagattctgttatggcagtta 6350791  T
Q  351 gagttagttttgataggatgtagttagtgtatg 383  Q
    |||  |||| ||||||  || ||||||| ||||    
T  6350792 gagagagttatgatagagtgcagttagtctatg 6350824  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 353
Target Start/End: Original strand, 11908017 - 11908097
Alignment:
Q  273 agattacttgaggagcaagtaacctgacatagctctaacaaacttgccacgcaagcttgctttctgctatgacagttagag 353  Q
    ||||| ||| |||| |||||||||| ||||||||||||| ||||||||||| |||| ||   | || ||||||||||||||    
T  11908017 agattgcttaaggaacaagtaacctcacatagctctaactaacttgccacgtaagcatgtaatatgttatgacagttagag 11908097  T

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Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 76 - 162
Target Start/End: Original strand, 17850357 - 17850443
Alignment:
Q  76 tcttcaagagcagtgagtgtgtccatccgaacattgactttaagtgattcaattgagtcatgggatatgattttaagtgatcggagg 162  Q
    |||||||||||||||||||||||||| ||||  ||||||||||| ||| ||||||||| ||| ||| ||||||||||||| ||||||    
T  17850357 tcttcaagagcagtgagtgtgtccattcgaagcttgactttaagagatccaattgagtaatgagatttgattttaagtgaccggagg 17850443  T

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Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 261 - 353
Target Start/End: Original strand, 35081986 - 35082078
Alignment:
Q  261 gaagaagatggaagattacttgaggagcaagtaacctgacatagctctaacaaacttgccacgcaagcttgctttctgctatgacagttagag 353  Q
    |||||||| | ||||||||||||| |||||||||| ||||||||||||||| ||||||||||  ||||||   |||||||||| |||||||||    
T  35081986 gaagaagaagaaagattacttgagaagcaagtaacttgacatagctctaactaacttgccacataagcttagattctgctatggcagttagag 35082078  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 156
Target Start/End: Complemental strand, 26909531 - 26909446
Alignment:
Q  71 acaactcttcaagagcagtgagtgtgtccatccgaacattgactttaagtgattcaattgagtcatgggatatgattttaagtgat 156  Q
    |||||| ||||||| | ||||| |||||||||||||  || ||||||| | |||||||||| ||||||||| ||||||||||||||    
T  26909531 acaactgttcaagatctgtgagcgtgtccatccgaagcttcactttaaataattcaattgaatcatgggatttgattttaagtgat 26909446  T

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