View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11027_low_8 (Length: 436)
Name: NF11027_low_8
Description: NF11027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11027_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 372
Target Start/End: Complemental strand, 25160183 - 25159827
Alignment:
| Q |
16 |
actttgaacgagccatggagctacagccaaaatggctatgcgaatgggcgaatggcaccgggtcgttgctctagttggttgaatccaaattgtactggcg |
115 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25160183 |
actttgaacgagccatggagctatagccaaaatggctatgcaaatgggcgaatggcaccgggtcgttgctccagttggttgaatccaaattgtactggcg |
25160084 |
T |
|
| Q |
116 |
gtgattctgcgatcgagccctatttggttacacattaccaacttcttgcacatgccgcagccgttgatgtgtacaagaaaaagtataaagaatctcaaaa |
215 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25160083 |
gtgattctgcgatcgagccctatttggtaacacattaccaacttcttgcacatgccgcagccgttgatgtgtacaagaaaaagtataaagaatctcaaaa |
25159984 |
T |
|
| Q |
216 |
gggtgtaataggcataaccttagtagcgaattggtatcttccactctcagattccaaatccgaccaaaaagcagcagaaagagcaattgattttatgtat |
315 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25159983 |
gggtgtaataggcataaccttagtaacgaattggtatcttccactctcagattccaaatccgaccaaaaagcagcagaaagagcaattgattttatgtat |
25159884 |
T |
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| Q |
316 |
ggatggtaagaactcatatataactctttccatttttatttatcttcaaaaggaaac |
372 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25159883 |
ggatggtaagaactcatctataactctttccatttttatttatcttcaaaaggaaac |
25159827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 25180412 - 25180195
Alignment:
| Q |
16 |
actttgaacgagccatggagctacagccaaaatggctatgcgaatgggcgaatggcaccgggtcgttgctctagttggttgaatccaaattgtactggcg |
115 |
Q |
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|||||||| ||||||||||| ||||| |||||||| ||||| ||||| ||||||||| ||||| || ||| |||||| ||||||||||| || || | |
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| T |
25180412 |
actttgaatgagccatggagttacagtcaaaatggatatgcaaatggcgcaatggcaccaggtcgatgttcttcttggtttaatccaaattgcaccggtg |
25180313 |
T |
|
| Q |
116 |
gtgattctgcgatcgagccctatttggttacacattaccaacttcttgcacatgccgcagccgttgatgtgtacaagaaaaagtataaagaatctcaaaa |
215 |
Q |
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| ||||||| | ||| || ||||| ||| ||||||| |||||||| || ||||| ||||| ||| |||||||||||| || ||| ||| |||||||| |
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| T |
25180312 |
gagattctggaaccgaaccttatttagttgcacattatcaacttctagctcatgcagcagctgttaatgtgtacaagactaaatatcaagtctctcaaaa |
25180213 |
T |
|
| Q |
216 |
gggtgtaataggcataac |
233 |
Q |
| |
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|||||| ||||| ||||| |
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| T |
25180212 |
gggtgtgataggtataac |
25180195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 25168744 - 25168527
Alignment:
| Q |
16 |
actttgaacgagccatggagctacagccaaaatggctatgcgaatgggcgaatggcaccgggtcgttgctctagttggttgaatccaaattgtactggcg |
115 |
Q |
| |
|
|||||||| || ||||||| ||||| ||| |||| ||||| ||||| ||||||||| ||||| |||||| |||||||||||||||||| || |||| |
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| T |
25168744 |
actttgaatgaaccatggacttacagtcaagatgggtatgcaaatggtgaaatggcacctggtcgatgctcttcttggttgaatccaaattgcaccggcg |
25168645 |
T |
|
| Q |
116 |
gtgattctgcgatcgagccctatttggttacacattaccaacttcttgcacatgccgcagccgttgatgtgtacaagaaaaagtataaagaatctcaaaa |
215 |
Q |
| |
|
||||||||| | || || ||||| ||| ||||||| |||||||| || ||||| |||| ||| || ||||||||| |||||| ||| |||||||| |
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| T |
25168644 |
gtgattctggaactgaaccttatttagttgcacattatcaacttctagctcatgcagcagttgttaatttgtacaagaccaagtatcaagtctctcaaaa |
25168545 |
T |
|
| Q |
216 |
gggtgtaataggcataac |
233 |
Q |
| |
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|||||| ||||| ||||| |
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| T |
25168544 |
gggtgtgataggtataac |
25168527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 25252522 - 25252739
Alignment:
| Q |
16 |
actttgaacgagccatggagctacagccaaaatggctatgcgaatgggcgaatggcaccgggtcgttgctctagttggttgaatccaaattgtactggcg |
115 |
Q |
| |
|
|||||||| || ||||||| ||||| ||| |||| ||||| ||||| ||||||||| || || |||||| |||||||||||||||||| || |||| |
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| T |
25252522 |
actttgaatgaaccatggacttacagtcaagatgggtatgcaaatggtgaaatggcaccaggacgatgctcttcttggttgaatccaaattgcaccggcg |
25252621 |
T |
|
| Q |
116 |
gtgattctgcgatcgagccctatttggttacacattaccaacttcttgcacatgccgcagccgttgatgtgtacaagaaaaagtataaagaatctcaaaa |
215 |
Q |
| |
|
||||||||| | || || ||||| ||| ||||||| |||||||| || ||||| |||| ||| || ||||||||| |||||| ||| |||||||| |
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| T |
25252622 |
gtgattctggaacagaaccttatttagttgcacattatcaacttctagctcatgcagcagttgttaatttgtacaagaccaagtatcaagtctctcaaaa |
25252721 |
T |
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| Q |
216 |
gggtgtaataggcataac |
233 |
Q |
| |
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|||||| ||||| ||||| |
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| T |
25252722 |
gggtgtgataggtataac |
25252739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 9213762 - 9213947
Alignment:
| Q |
16 |
actttgaacgagccatggagctacagccaaaatggctatgcgaatgggcgaatggcaccgggtcgttgctctagttggttgaatccaaattgtactggcg |
115 |
Q |
| |
|
|||||||| || |||||||| ||||| |||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||| || || | |
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| T |
9213762 |
actttgaatgaaccatggagttacagtcaaaatggctatgcaaatggacgaatggcaccaggtcgttgttctagttggttgaatccaaattgcaccggtg |
9213861 |
T |
|
| Q |
116 |
gtgattctgcgatcgagccctatttggttacacattaccaacttcttgcacatgccgcagccgttgatgtgtacaagaaaaagtat |
201 |
Q |
| |
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||||||||||||| ||||||||| | || ||||| ||||||||||| || ||||||| ||| || |||||||||||| ||||||| |
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| T |
9213862 |
gtgattctgcgattgagccctatatagtcacacactaccaacttctagctcatgccgaagctgtaaatgtgtacaagacaaagtat |
9213947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 209 - 326
Target Start/End: Original strand, 9214119 - 9214236
Alignment:
| Q |
209 |
ctcaaaagggtgtaataggcataaccttagtagcgaattggtatcttccactctcagattccaaatccgaccaaaaagcagcagaaagagcaattgattt |
308 |
Q |
| |
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||||||| ||||||||||| |||||||| ||||| || ||||| || |||||||||||||| ||||||||||| ||||| || |||||||| |||| || |
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| T |
9214119 |
ctcaaaatggtgtaataggaataaccttggtagctaactggtacctgccactctcagattcgaaatccgaccagaaagctgctgaaagagctgttgactt |
9214218 |
T |
|
| Q |
309 |
tatgtatggatggtaaga |
326 |
Q |
| |
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||||||||||||||||| |
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| T |
9214219 |
catgtatggatggtaaga |
9214236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 42167089 - 42167040
Alignment:
| Q |
152 |
accaacttcttgcacatgccgcagccgttgatgtgtacaagaaaaagtat |
201 |
Q |
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||||||||||||| ||||||||||| || |||||||||||||| |||||| |
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| T |
42167089 |
accaacttcttgctcatgccgcagctgtcgatgtgtacaagaagaagtat |
42167040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 236
Target Start/End: Complemental strand, 42166961 - 42166930
Alignment:
| Q |
205 |
gaatctcaaaagggtgtaataggcataacctt |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
42166961 |
gaatctcaaaagggtgtaataggcataacctt |
42166930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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