View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11028_high_12 (Length: 209)

Name: NF11028_high_12
Description: NF11028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11028_high_12
NF11028_high_12
[»] chr4 (3 HSPs)
chr4 (74-121)||(31889444-31889491)
chr4 (74-103)||(26947466-26947495)
chr4 (74-102)||(13251005-13251033)
[»] chr6 (2 HSPs)
chr6 (74-109)||(12877822-12877857)
chr6 (75-103)||(2936663-2936691)
[»] chr8 (1 HSPs)
chr8 (74-103)||(41279725-41279754)
[»] chr5 (1 HSPs)
chr5 (74-103)||(25635541-25635570)
[»] scaffold0019 (1 HSPs)
scaffold0019 (74-102)||(174071-174099)
[»] chr1 (1 HSPs)
chr1 (74-102)||(29402464-29402492)


Alignment Details
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 31889491 - 31889444
Alignment:
Q  74 cttttgaaatataatcaaaatttacaacaaataatacctattgatcta 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31889491 cttttgaaatataatcaaaatttacaacaaataatacctattgatcta 31889444  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 103
Target Start/End: Complemental strand, 26947495 - 26947466
Alignment:
Q  74 cttttgaaatataatcaaaatttacaacaa 103  Q
    ||||||||||||||||||||||||||||||    
T  26947495 cttttgaaatataatcaaaatttacaacaa 26947466  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 102
Target Start/End: Original strand, 13251005 - 13251033
Alignment:
Q  74 cttttgaaatataatcaaaatttacaaca 102  Q
    |||||||||||||||||||||||||||||    
T  13251005 cttttgaaatataatcaaaatttacaaca 13251033  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 74 - 109
Target Start/End: Original strand, 12877822 - 12877857
Alignment:
Q  74 cttttgaaatataatcaaaatttacaacaaataata 109  Q
    ||||||||||||| ||||||||||||||||||||||    
T  12877822 cttttgaaatatactcaaaatttacaacaaataata 12877857  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 2936663 - 2936691
Alignment:
Q  75 ttttgaaatataatcaaaatttacaacaa 103  Q
    |||||||||||||||||||||||||||||    
T  2936663 ttttgaaatataatcaaaatttacaacaa 2936691  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 41279725 - 41279754
Alignment:
Q  74 cttttgaaatataatcaaaatttacaacaa 103  Q
    ||||||||||||||||||||||||||||||    
T  41279725 cttttgaaatataatcaaaatttacaacaa 41279754  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 25635541 - 25635570
Alignment:
Q  74 cttttgaaatataatcaaaatttacaacaa 103  Q
    ||||||||||||||||||||||||||||||    
T  25635541 cttttgaaatataatcaaaatttacaacaa 25635570  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 102
Target Start/End: Complemental strand, 174099 - 174071
Alignment:
Q  74 cttttgaaatataatcaaaatttacaaca 102  Q
    |||||||||||||||||||||||||||||    
T  174099 cttttgaaatataatcaaaatttacaaca 174071  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 102
Target Start/End: Original strand, 29402464 - 29402492
Alignment:
Q  74 cttttgaaatataatcaaaatttacaaca 102  Q
    |||||||||||||||||||||||||||||    
T  29402464 cttttgaaatataatcaaaatttacaaca 29402492  T

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