View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11028_high_2 (Length: 442)
Name: NF11028_high_2
Description: NF11028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11028_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 38608846 - 38608607
Alignment:
| Q |
18 |
gctggctggcttgtttaaactaaggaatgtacgttctagtttagttgtacagaagcttaacgagttcatattgatttgttcaattcaggaatctaaaaag |
117 |
Q |
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| T |
38608846 |
gctggctggcttgtttaaactaaggaatgtacgttctagttaagttgtacagaagcttaacgagttcatattgatcttttcaattcaggaatctaaaaag |
38608747 |
T |
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| Q |
118 |
gagaagagcagtgactttaaatatgatgggcctggatggattattcttgctgtagggatagtagcatgtgcgatattattctcaaaattatcggtgaaag |
217 |
Q |
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| T |
38608746 |
gagaagagcagtgactttaaatatgacgggcctggatggattattcttgcagtagggatagtagcatgtgcgatattattctcaaaattatcagtgaaag |
38608647 |
T |
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| Q |
218 |
acaattcattttaggttgaagttgtgaaacaaagtattgt |
257 |
Q |
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| T |
38608646 |
acaattcattttaggttgaagttgtgaaacaaagtattgt |
38608607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 38608495 - 38608381
Alignment:
| Q |
313 |
aaatagattcgtgatttacacctttaaaattcactttagaactactcttt-cttaattttctttatctctcattttcaatagatggtgaaaatttcaata |
411 |
Q |
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| T |
38608495 |
aaatagattcgtgatttacacctttaaaattcactttagaactactcttttcttaattttctttatctctcattttcaatagatggtgaaaatttcaata |
38608396 |
T |
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| Q |
412 |
gattattacgtcaca |
426 |
Q |
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| T |
38608395 |
gattattacgtcaca |
38608381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 38603625 - 38603535
Alignment:
| Q |
95 |
gttcaattcaggaatctaaaaaggagaagagcagtgactttaaatatgatgggcctggatggattattcttgctgtagggatagtagcatg |
185 |
Q |
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| T |
38603625 |
gttcatttcaggaatctaaaaagcagaagagcagtgagtttacatatgacttgcttggatgggctattcttgcagcaggtatagtagcatg |
38603535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 297
Target Start/End: Complemental strand, 38608553 - 38608514
Alignment:
| Q |
258 |
aattctcaacctcttgaatcattgttcctaataattgtga |
297 |
Q |
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| T |
38608553 |
aattctcaacctcttgaatcattgttcctaatagttgtga |
38608514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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