View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11028_low_1 (Length: 484)

Name: NF11028_low_1
Description: NF11028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11028_low_1
NF11028_low_1
[»] chr6 (59 HSPs)
chr6 (19-254)||(27679356-27679594)
chr6 (20-254)||(27592560-27592797)
chr6 (19-254)||(26802852-26803090)
chr6 (31-254)||(27677170-27677391)
chr6 (19-254)||(27705942-27706179)
chr6 (316-468)||(27718218-27718370)
chr6 (19-254)||(27604242-27604482)
chr6 (299-468)||(27677436-27677605)
chr6 (316-468)||(27610841-27610993)
chr6 (299-466)||(26802640-26802807)
chr6 (19-247)||(27427150-27427380)
chr6 (299-458)||(27706224-27706383)
chr6 (299-468)||(27592842-27593011)
chr6 (299-458)||(27679152-27679311)
chr6 (19-228)||(28786672-28786882)
chr6 (19-228)||(28792793-28793003)
chr6 (299-468)||(27698316-27698485)
chr6 (299-468)||(27604527-27604696)
chr6 (19-247)||(28781516-28781745)
chr6 (335-468)||(26884361-26884494)
chr6 (19-196)||(27698124-27698301)
chr6 (326-468)||(28786474-28786616)
chr6 (326-468)||(28792595-28792737)
chr6 (332-468)||(27427461-27427597)
chr6 (326-468)||(28781335-28781477)
chr6 (326-468)||(26861809-26861951)
chr6 (19-143)||(27610658-27610782)
chr6 (19-138)||(27718037-27718156)
chr6 (36-252)||(26646887-26647106)
chr6 (36-252)||(26752855-26753074)
chr6 (407-468)||(27724775-27724836)
chr6 (345-468)||(27531065-27531188)
chr6 (39-207)||(25538997-25539167)
chr6 (39-207)||(26143322-26143492)
chr6 (300-432)||(25538772-25538904)
chr6 (20-116)||(27530840-27530936)
chr6 (36-208)||(26056375-26056549)
chr6 (36-208)||(26076345-26076519)
chr6 (302-432)||(25579951-25580081)
chr6 (302-432)||(26143097-26143227)
chr6 (69-219)||(27214894-27215046)
chr6 (39-208)||(25483512-25483683)
chr6 (315-454)||(27214630-27214769)
chr6 (315-454)||(27234459-27234598)
chr6 (39-113)||(25580272-25580346)
chr6 (300-358)||(26056232-26056290)
chr6 (300-358)||(26076202-26076260)
chr6 (410-468)||(28098302-28098360)
chr6 (36-113)||(25511488-25511565)
chr6 (56-112)||(26884621-26884677)
chr6 (178-252)||(25506704-25506779)
chr6 (417-468)||(31284484-31284535)
chr6 (390-456)||(25506897-25506963)
chr6 (335-432)||(26656221-26656318)
chr6 (335-432)||(26762192-26762289)
chr6 (70-111)||(31284823-31284864)
chr6 (302-358)||(25482048-25482104)
chr6 (302-372)||(26646771-26646838)
chr6 (302-372)||(26752739-26752806)
[»] scaffold0003 (2 HSPs)
scaffold0003 (19-247)||(59983-60213)
scaffold0003 (332-468)||(59766-59902)
[»] chr4 (11 HSPs)
chr4 (19-247)||(18074175-18074405)
chr4 (19-219)||(18655011-18655211)
chr4 (19-219)||(18723619-18723819)
chr4 (19-207)||(18731038-18731226)
chr4 (19-211)||(18698934-18699126)
chr4 (19-219)||(18679094-18679301)
chr4 (332-468)||(18073958-18074094)
chr4 (335-426)||(18731349-18731440)
chr4 (326-415)||(18655313-18655402)
chr4 (326-415)||(18723921-18724010)
chr4 (335-425)||(18699245-18699335)
[»] scaffold0349 (4 HSPs)
scaffold0349 (316-468)||(14195-14347)
scaffold0349 (316-458)||(3259-3402)
scaffold0349 (19-138)||(3077-3196)
scaffold0349 (90-143)||(14082-14135)
[»] scaffold0419 (2 HSPs)
scaffold0419 (19-247)||(7902-8131)
scaffold0419 (335-468)||(7721-7854)
[»] scaffold0277 (4 HSPs)
scaffold0277 (19-247)||(13213-13442)
scaffold0277 (19-247)||(4250-4481)
scaffold0277 (335-468)||(4529-4662)
scaffold0277 (335-468)||(13490-13623)
[»] chr1 (6 HSPs)
chr1 (19-219)||(267878-268090)
chr1 (327-465)||(28127516-28127654)
chr1 (165-254)||(28164048-28164137)
chr1 (327-423)||(28164200-28164296)
chr1 (69-114)||(28127263-28127308)
chr1 (156-217)||(28127339-28127400)
[»] chr8 (1 HSPs)
chr8 (19-115)||(29273376-29273472)


Alignment Details
Target: chr6 (Bit Score: 165; Significance: 5e-88; HSPs: 59)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 27679594 - 27679356
Alignment:
Q  19 gtaagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatct 118  Q
    |||||||||| ||||| ||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27679594 gtaagggctgtcgactgatcttgttggagatgtatttgactatctttccaataagcttgtattcatatctattcatgtgcaataagataagttagtgtct 27679495  T
Q  119 aacaacatcacaatcacatccatgtactcataatatgttatacatttctaactatttcgacatataaataactaa---tacttgtttaaaaacgtatata 215  Q
    |||||||||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||||||||||||||   |||||||||||||  |||||||    
T  27679494 aacaacatcacaatcacatccatgtactaagaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatata 27679395  T
Q  216 aaaacggtatttctcatttaacctttaagatgagattat 254  Q
    |||| |||||||| | |||||||||||||||||||||||    
T  27679394 aaaaaggtatttcccttttaacctttaagatgagattat 27679356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 27592560 - 27592797
Alignment:
Q  20 taagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatcta 119  Q
    ||||||||| ||||| ||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27592560 taagggctgtcgactgatcttgttggagatgtatttgactatctttccaataagcttgtattcatatctattcatgtgcaataagataagttagtgtcta 27592659  T
Q  120 acaacatcacaatcacatccatgtactcataatatgttatacatttctaactatttcgacatataaataactaa---tacttgtttaaaaacgtatataa 216  Q
    ||||||||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||||||||||||||   |||||||||||||  ||||||||    
T  27592660 acaacatcacaatcacatccatgtactaagaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataa 27592759  T
Q  217 aaacggtatttctcatttaacctttaagatgagattat 254  Q
    ||| |||||||| | |||||||||||||||||||||||    
T  27592760 aaaaggtatttcccttttaacctttaagatgagattat 27592797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 26803090 - 26802852
Alignment:
Q  19 gtaagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtat-- 116  Q
    |||||||||| ||| | ||||||||||||||| || ||||||||| ||| || | ||||||||||||||||||||||| ||| |||||||||||||||      
T  26803090 gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt 26802991  T
Q  117 -ctaacaacatcacaatcacatccatgtactcataatatgttatacatttctaactatttcgacatataaataactaatacttgtttaaaaacgtatata 215  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26802990 actaacaacatcacaatcacatccatgtactcataatatattatacatttctaactatttcaacatataaataactaatacttgtttaaaaacgtatata 26802891  T
Q  216 aaaacggtatttctcatttaacctttaagatgagattat 254  Q
    | || |||||||| |||||||||||||||||||||||||    
T  26802890 agaaaggtatttcccatttaacctttaagatgagattat 26802852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 31 - 254
Target Start/End: Original strand, 27677170 - 27677391
Alignment:
Q  31 gactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatctaacaacatcaca 130  Q
    |||| ||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27677170 gactgatcttgttggagatgtatttgactatctttccaataagcttgtattcatatctattcatgtgcaataagataagttagtgtctaacaacatcaca 27677269  T
Q  131 atcacatccatgtactcataatatgttatacatttctaactatttcgacatataaataactaatacttgtttaaaaac-gtatataaaaacggtatttct 229  Q
    |||||||||||||||   |||| | |||||||||||||||||||||||||||||||||||||||| |  ||| ||||| ||||||||||| ||||||||     
T  27677270 atcacatccatgtac---taatgtattatacatttctaactatttcgacatataaataactaatagtacttttaaaactgtatataaaaaaggtatttcc 27677366  T
Q  230 catttaacctttaagatgagattat 254  Q
    | |||||||||||||||||||||||    
T  27677367 cttttaacctttaagatgagattat 27677391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 27705942 - 27706179
Alignment:
Q  19 gtaagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatct 118  Q
    ||||||| || ||||| ||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27705942 gtaagggatgtcgactgatcttgttggagatgtatttgactatctttccaataagcttgtattcatatctattcatgtgcaataagataagttagtgtct 27706041  T
Q  119 aacaacatcacaatcacatccatgtactcataatatgttatacatttctaactatttcgacatataaataactaa---tacttgtttaaaaacgtatata 215  Q
    ||||||||| |||||||||||||||||| | ||| | |||| |||||||||||||||||||||||||||||||||   |||||||||||||  |||||||    
T  27706042 aacaacatcccaatcacatccatgtactaagaatgtattattcatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatata 27706141  T
Q  216 aaaacggtatttctcatttaacctttaagatgagattat 254  Q
    |||| |||||||| | ||||| |||||||||||||||||    
T  27706142 aaaaaggtatttc-cctttaaactttaagatgagattat 27706179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 316 - 468
Target Start/End: Original strand, 27718218 - 27718370
Alignment:
Q  316 ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcattttg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27718218 ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgttattcttatcattttg 27718317  T
Q  416 aaacctcttttcatgctcagccaatgcttcaccataactacctgtctgatgtc 468  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27718318 aaacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtc 27718370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 27604242 - 27604482
Alignment:
Q  19 gtaagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatct 118  Q
    |||||||||| ||||| ||||||||||||||   | | ||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||| |    
T  27604242 gtaagggctgacgactgatcttgttggagatttctttcactatctttccaataagctcgtattcatatctattcatgtccaataagataagttagtatgt 27604341  T
Q  119 aacaacatcacaatcacatccatgt--actcataatatgttatacatttctaactatttcgacatataaataactaatacttgtttaaaaacgtatataa 216  Q
    |||||||||| ||||||||||||||  ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  27604342 aacaacatcataatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgtaaataa 27604441  T
Q  217 aaacggtatt---tctcatttaacctttaagatgagattat 254  Q
    ||| ||||||   |||||||||||||| || ||||||||||    
T  27604442 aaaaggtatttgatctcatttaaccttgaatatgagattat 27604482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 299 - 468
Target Start/End: Original strand, 27677436 - 27677605
Alignment:
Q  299 ggatttaagtaatgttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatg 398  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||| ||||||||||||||||    
T  27677436 ggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatg 27677535  T
Q  399 ttattcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctgtctgatgtc 468  Q
     | |||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27677536 cttttcggatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtc 27677605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 316 - 468
Target Start/End: Original strand, 27610841 - 27610993
Alignment:
Q  316 ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcattttg 415  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||    
T  27610841 ggtacccaggaggactatcatggtagccggaaaagtttgcagcctggctcagagccactttccatccctgcaacctctccatgttattcttatcattttg 27610940  T
Q  416 aaacctcttttcatgctcagccaatgcttcaccataactacctgtctgatgtc 468  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27610941 aaacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtc 27610993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 299 - 466
Target Start/End: Complemental strand, 26802807 - 26802640
Alignment:
Q  299 ggatttaagtaatgttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatg 398  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||    
T  26802807 ggatttaagtaaagttgggtaccgaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctccaacctctccatg 26802708  T
Q  399 ttattcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctgtctgatg 466  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||| |||||    
T  26802707 ttatccttatcattttgaaaccttttttcatgctcagccaatgcttcaccatagctacatgtatgatg 26802640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 27427150 - 27427380
Alignment:
Q  19 gtaagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatct 118  Q
    |||||| ||| ||||| ||||||||||||||| || ||||||||||||| ||||||| |||||||||||||||||||| |||||| |||||||||||| |    
T  27427150 gtaaggactgtcgactgatcttgttggagatgtatttgactatctttccaataagctcgtattcatatctattcatgtccaataatataagttagtatgt 27427249  T
Q  119 aacaacat--cacaatcacatccatgtactcataatatgttatacatttctaactatttcgacatataaataactaatacttgtttaaaaacgtatataa 216  Q
    ||||||||  |||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||| | |||||||||||| || ||||    
T  27427250 aacaacatcacacaatcacatccatgtactcataatatattatacatttttaactattttgacatataaataactaacaattgtttaaaaacataaataa 27427349  T
Q  217 aaacggtatttctcatttaacctttaagatg 247  Q
    ||| ||| || | ||||||  ||||||||||    
T  27427350 aaaaggtgttacacatttaggctttaagatg 27427380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 299 - 458
Target Start/End: Original strand, 27706224 - 27706383
Alignment:
Q  299 ggatttaagtaatgttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatg 398  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||| ||||||||||||||||    
T  27706224 ggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatg 27706323  T
Q  399 ttattcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacct 458  Q
    || |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27706324 tttttcggatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacct 27706383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 299 - 468
Target Start/End: Original strand, 27592842 - 27593011
Alignment:
Q  299 ggatttaagtaatgttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatg 398  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||   |||||||| ||||||||||||||||    
T  27592842 ggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatg 27592941  T
Q  399 ttattcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctgtctgatgtc 468  Q
    || |||  |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  27592942 tttttcggatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttatgatgtc 27593011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 299 - 458
Target Start/End: Complemental strand, 27679311 - 27679152
Alignment:
Q  299 ggatttaagtaatgttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatg 398  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||  |||||||||||||||    
T  27679311 ggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctttttccatccttgcaacctctccatg 27679212  T
Q  399 ttattcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacct 458  Q
    || |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27679211 tttttcggatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacct 27679152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 28786882 - 28786672
Alignment:
Q  19 gtaagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatct 118  Q
    |||||||||| ||||| ||||||||||||||| || ||||||| | ||| |||| |||||||||||||||||||||||   ||||||||||||||||| |    
T  28786882 gtaagggctgacgactgatcttgttggagatgtatttgactatatctccaataaacttgtattcatatctattcatgtcatataagataagttagtatgt 28786783  T
Q  119 aacaacatcacaatcacatccatgtactcataatatgttatacatttctaactatttcgacatataaataact-aatacttgtttaaaaacgtatataaa 217  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||||||||||||| |||||| |||||| | |||||||||||||||||||| ||| |    
T  28786782 aacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaaataattaaatacttgtttaaaaacgtaaataga 28786683  T
Q  218 aacggtatttc 228  Q
    || ||| ||||    
T  28786682 aaaggtgtttc 28786672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 28793003 - 28792793
Alignment:
Q  19 gtaagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatct 118  Q
    |||||||||| ||||| ||||||||||||||| || ||||||| | ||| |||| |||||||||||||||||| |||| | ||||||||||||||||| |    
T  28793003 gtaagggctgacgactgatcttgttggagatgtatttgactatatctccaataaacttgtattcatatctattaatgtccgataagataagttagtatgt 28792904  T
Q  119 aacaacatcacaatcacatccatgtactcataatatgttatacatttctaactatttcgacatataaataact-aatacttgtttaaaaacgtatataaa 217  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||||||||||||| |||||| |||||| | |||||||||||||||||||| ||| |    
T  28792903 aacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaaataattaaatacttgtttaaaaacgtaaataga 28792804  T
Q  218 aacggtatttc 228  Q
    || ||| ||||    
T  28792803 aaaggtgtttc 28792793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 299 - 468
Target Start/End: Original strand, 27698316 - 27698485
Alignment:
Q  299 ggatttaagtaatgttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatg 398  Q
    |||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||| ||||||||||||||||    
T  27698316 ggatttaagtaaagttgggtacctgggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatg 27698415  T
Q  399 ttattcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctgtctgatgtc 468  Q
    || |||  ||||||||||||||||||||||||||||||||||||||  |||||||||||| | |||||||    
T  27698416 tttttcggatcattttgaaacctcttttcatgctcagccaatgctttgccataactacctttatgatgtc 27698485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 299 - 468
Target Start/End: Original strand, 27604527 - 27604696
Alignment:
Q  299 ggatttaagtaatgttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatg 398  Q
    ||||||| ||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||  |||    
T  27604527 ggatttatgtagtgttgagtacccaggaggactatcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttatg 27604626  T
Q  399 ttattcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctgtctgatgtc 468  Q
    |||| || ||||||||||||||| |||| ||||||||||||||||| ||| ||||||||| | |||||||    
T  27604627 ttatcctcatcattttgaaacctttttttatgctcagccaatgcttgaccgtaactacctttatgatgtc 27604696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 28781745 - 28781516
Alignment:
Q  19 gtaagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatct 118  Q
    ||||| |||| ||||| ||||||||||||||| || ||||||| |  || |||| |||||||||||||||||||||||   ||||||||||||||||| |    
T  28781745 gtaagtgctgacgactgatcttgttggagatgtatttgactatatcgccaataaacttgtattcatatctattcatgtcatataagataagttagtatgt 28781646  T
Q  119 aacaacatcacaatcacatccatgtactcataatatgttatacatttctaactatttcgacatataaataact-aatacttgtttaaaaacgtatataaa 217  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||||||||||||| |||||| |||||| | |||| ||||||||||||||| ||| |    
T  28781645 aacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaaataattaaataattgtttaaaaacgtaaataga 28781546  T
Q  218 aacggtatttctcatttaacctttaagatg 247  Q
    ||  || |||| ||||||  ||||||||||    
T  28781545 aaaagtgtttcccatttaggctttaagatg 28781516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 335 - 468
Target Start/End: Complemental strand, 26884494 - 26884361
Alignment:
Q  335 atggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcattttgaaacctcttttcatgctca 434  Q
    |||||||||||||||||||||| | || |||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||    
T  26884494 atggtagccggacaagttagcaacttgcctcatagccattttccatcgctgcaacctctccatgttatccttatcattttgaaaccttttttcatggtca 26884395  T
Q  435 gccaatgcttcaccataactacctgtctgatgtc 468  Q
    |||||||||||||||||||||||||| |||||||    
T  26884394 gccaatgcttcaccataactacctgtatgatgtc 26884361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 27698124 - 27698301
Alignment:
Q  19 gtaagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatct 118  Q
    |||||||||| ||||| ||||||||||||||| || ||||||||| | | |||| |||||||||||||||| || |||  | ||||| ||||||||||      
T  27698124 gtaagggctgacgactgatcttgttggagatgtatttgactatctcttcaataaacttgtattcatatctactcgtgtcgagtaagaaaagttagtatga 27698223  T
Q  119 aacaacatcacaatcacatccatgtactcataatatgttatacatttctaactatttcgacatataaataactaatac 196  Q
    |||||||||||||||||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||    
T  27698224 aacaacatcacaatcacatctatgtactcagaatatattataaatttctaactatttcgacatataaataactaatac 27698301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 326 - 468
Target Start/End: Complemental strand, 28786616 - 28786474
Alignment:
Q  326 aggactatcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcattttgaaacctcttt 425  Q
    |||||||  |||||||||||||||||||||||| ||| ||| |||||  |||||| | ||||||||||||||||||| ||||||||||||||||||||||    
T  28786616 aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttt 28786517  T
Q  426 tcatgctcagccaatgcttcaccataactacctgtctgatgtc 468  Q
    |||||| ||||||||||||||||||||| |||||| |||||||    
T  28786516 tcatgcccagccaatgcttcaccataacgacctgtatgatgtc 28786474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 326 - 468
Target Start/End: Complemental strand, 28792737 - 28792595
Alignment:
Q  326 aggactatcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcattttgaaacctcttt 425  Q
    |||||||  |||||||||||||||||||||||| ||| ||| |||||  |||||| | ||||||||||||||||||| ||||||||||||||||||||||    
T  28792737 aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttt 28792638  T
Q  426 tcatgctcagccaatgcttcaccataactacctgtctgatgtc 468  Q
    |||||| ||||||||||||||||||||| |||||| |||||||    
T  28792637 tcatgcccagccaatgcttcaccataacgacctgtatgatgtc 28792595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 332 - 468
Target Start/End: Original strand, 27427461 - 27427597
Alignment:
Q  332 atcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcattttgaaacctcttttcatgc 431  Q
    ||||||||||| || ||||||||||||| | |||| ||||| ||||||| ||||||||||||||||||| ||| |||||||||||||||| |||||||||    
T  27427461 atcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacctattttcatgc 27427560  T
Q  432 tcagccaatgcttcaccataactacctgtctgatgtc 468  Q
    ||||||||||||| |||||| |||||||| |||||||    
T  27427561 tcagccaatgctttaccatacctacctgtatgatgtc 27427597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 326 - 468
Target Start/End: Complemental strand, 28781477 - 28781335
Alignment:
Q  326 aggactatcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcattttgaaacctcttt 425  Q
    |||||||  |||||||||||||||||||||||| ||| ||| |||||  |||||| | ||||||||||||||||||| ||||||||||||||||||||||    
T  28781477 aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttt 28781378  T
Q  426 tcatgctcagccaatgcttcaccataactacctgtctgatgtc 468  Q
    |||||  ||||||||||||||||||||  |||||| |||||||    
T  28781377 tcatgtccagccaatgcttcaccataaggacctgtatgatgtc 28781335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 326 - 468
Target Start/End: Complemental strand, 26861951 - 26861809
Alignment:
Q  326 aggactatcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcattttgaaacctcttt 425  Q
    |||||||  ||||||||| |||||||||||||| ||| ||| ||| | |||||||| |||||||||||||||||||| | |||||||||||||||| |||    
T  26861951 aggactaaaatggtagcctgacaagttagcagcttggttcagagcaactttccatctctgcaacctctccatgttatccatatcattttgaaaccttttt 26861852  T
Q  426 tcatgctcagccaatgcttcaccataactacctgtctgatgtc 468  Q
    ||||||| ||||||||||||||||||| ||||| | |||||||    
T  26861851 tcatgcttagccaatgcttcaccataaatacctctatgatgtc 26861809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 27610658 - 27610782
Alignment:
Q  19 gtaagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatct 118  Q
    ||||||| || ||||| ||||||||||||||| || ||||||||| |||  ||| || |||||||||||||||||||  ||||||||||||||||||| |    
T  27610658 gtaagggttgacgactgatcttgttggagatgtatttgactatctctccagtaaactcgtattcatatctattcatgcccaataagataagttagtatgt 27610757  T
Q  119 aacaacatcacaatcacatccatgt 143  Q
     ||||||||||||||||||||||||    
T  27610758 gacaacatcacaatcacatccatgt 27610782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 27718037 - 27718156
Alignment:
Q  19 gtaagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatct 118  Q
    ||||||| || |||||  |||||||||||||| || ||||||||| ||| |||| || |||||||||||||||||||| || |||||||||||||||| |    
T  27718037 gtaagggttgacgactggtcttgttggagatgtatttgactatctctccaataaactcgtattcatatctattcatgtccagtaagataagttagtatgt 27718136  T
Q  119 aacaacatcacaatcacatc 138  Q
     |||||||||||||||||||    
T  27718137 gacaacatcacaatcacatc 27718156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 36 - 252
Target Start/End: Complemental strand, 26647106 - 26646887
Alignment:
Q  36 atcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatct--aacaacatcacaatc 133  Q
    |||||||||||||||  |  ||||||||| || |||| ||||||||||||||||||||||| | | ||||||||||||||  |  | |||||||||||      
T  26647106 atcttgttggagatgtcttcgactatcttcccaataaacttgtattcatatctattcatgtcccacaagataagttagtacatgcaccaacatcacaaat 26647007  T
Q  134 acatccatgtactcataatatgttatacatttctaactatttcgacatataaataactaatacttgtttaaaaacgtatataaaaa-cggtatttctcat 232  Q
    ||||  ||||||  | ||||| ||||||| |||||||| ||| ||||||||||||| | |||||||||||||||| |  |||||||   || ||||  ||    
T  26647006 acattgatgtaccgagaatatattatacagttctaactcttttgacatataaataatttatacttgtttaaaaacattaataaaaatatgtgtttcctat 26646907  T
Q  233 ttaacctttaagatgagatt 252  Q
    |||| |||||||||||||||    
T  26646906 ttaagctttaagatgagatt 26646887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 36 - 252
Target Start/End: Complemental strand, 26753074 - 26752855
Alignment:
Q  36 atcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatct--aacaacatcacaatc 133  Q
    |||||||||||||||  |  ||||||||| || |||| ||||||||||||||||||||||| | | ||||||||||||||  |  | |||||||||||      
T  26753074 atcttgttggagatgtcttcgactatcttcccaataaacttgtattcatatctattcatgtcccacaagataagttagtacatgcaccaacatcacaaat 26752975  T
Q  134 acatccatgtactcataatatgttatacatttctaactatttcgacatataaataactaatacttgtttaaaaacgtatataaaaa-cggtatttctcat 232  Q
    ||||  ||||||  | ||||| ||||||| |||||||| ||| ||||||||||||| | |||||||||||||||| |  |||||||   || ||||  ||    
T  26752974 acattgatgtaccgagaatatattatacagttctaactcttttgacatataaataatttatacttgtttaaaaacattaataaaaatatgtgtttcctat 26752875  T
Q  233 ttaacctttaagatgagatt 252  Q
    |||| |||||||||||||||    
T  26752874 ttaagctttaagatgagatt 26752855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 27724775 - 27724836
Alignment:
Q  407 atcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctgtctgatgtc 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27724775 atcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtc 27724836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 345 - 468
Target Start/End: Original strand, 27531065 - 27531188
Alignment:
Q  345 gacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcattttgaaacctcttttcatgctcagccaatgctt 444  Q
    ||||||||||| || ||||||| |||   ||||||| |||||||||||||  |||||| |||||||||||||||| | |||| |||| |||| |||||||    
T  27531065 gacaagttagccgcttggctcagagcttctttccattgctgcaacctctcagtgttatccttatcattttgaaacttttttttatgcacagctaatgctt 27531164  T
Q  445 caccataactacctgtctgatgtc 468  Q
    ||||||| |||||||| |||||||    
T  27531165 caccatatctacctgtgtgatgtc 27531188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 39 - 207
Target Start/End: Complemental strand, 25539167 - 25538997
Alignment:
Q  39 ttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatctaa--caacatcacaatcaca 136  Q
    ||||||||||||  |  |||||||||  | |||| ||||||||||||||||||||||| |||||||||||||||| |  |||   || |||| |||||||    
T  25539167 ttgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagataagttagaacataaactaaaatcaaaatcaca 25539068  T
Q  137 tccatgtactcataatatgttatacatttctaactatttcgacatataaataactaatacttgtttaaaaa 207  Q
    |||||||| | | ||||| |||| || |||||| | ||| ||||||||||||||| | |||||||| ||||    
T  25539067 tccatgtattgagaatatattatgcaattctaatttttttgacatataaataacttacacttgttttaaaa 25538997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 39 - 207
Target Start/End: Complemental strand, 26143492 - 26143322
Alignment:
Q  39 ttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatcta-ac-aacatcacaatcaca 136  Q
    ||||||||||||  |  |||||||||  | |||| ||||||||||||||||||||||| ||||||||||| |||| |  || || || |||| |||||||    
T  26143492 ttgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagataaattagaaaatacactaaaatcaaaatcaca 26143393  T
Q  137 tccatgtactcataatatgttatacatttctaactatttcgacatataaataactaatacttgtttaaaaa 207  Q
    |||||||| | | ||||| |||| || |||||||| ||| ||||||||||||||| | |||||||| ||||    
T  26143392 tccatgtattgagaatatattatgcaattctaacttttttgacatataaataacttacacttgttttaaaa 26143322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 300 - 432
Target Start/End: Complemental strand, 25538904 - 25538772
Alignment:
Q  300 gatttaagtaatgttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgt 399  Q
    ||||||||||| || ||||||||| ||||||||| ||| |||||||||||||||||||| ||| | | ||| |  |||||| |  |||| | ||||||||    
T  25538904 gatttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctccatgt 25538805  T
Q  400 tattcttatcattttgaaacctcttttcatgct 432  Q
    | |||| || |||||||||||||| ||||||||    
T  25538804 ttttctcattattttgaaacctctcttcatgct 25538772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 27530840 - 27530936
Alignment:
Q  20 taagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtat 116  Q
    ||||||||  ||||||||| ||||||| |||  |  |||||||||||| |||| || |||||||||||||||||||| |||||||||||||||||||    
T  27530840 taagggctcacgactaatcctgttggaaatgtcttcgactatctttccaataaactcgtattcatatctattcatgtccaataagataagttagtat 27530936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 208
Target Start/End: Complemental strand, 26056549 - 26056375
Alignment:
Q  36 atcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatcta-acaaca-tcacaatc 133  Q
    |||||||||||||||| |  |||||||||  | |||| |||| ||||| |||||||||||| ||||||| |||||||| |  || || | | ||| ||||    
T  26056549 atcttgttggagatgccttcgactatcttctcaataaacttgcattcagatctattcatgtccaataaggtaagttagaacatacactagaatcaaaatc 26056450  T
Q  134 acatccatgtactcataatatgttatacatttctaactatttcgacatataaataactaatacttgtttaaaaac 208  Q
    ||||||||||| | ||||||| |||| || |||||||| ||| ||||||||||||||| | ||| |||| |||||    
T  26056449 acatccatgtattgataatatattatgcaattctaacttttttgacatataaataacttacactagttttaaaac 26056375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 208
Target Start/End: Complemental strand, 26076519 - 26076345
Alignment:
Q  36 atcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatcta-acaaca-tcacaatc 133  Q
    |||||||||||||||| |  |||||||||  | |||| |||| ||||| |||||||||||| ||||||| |||||||| |  || || | | ||| ||||    
T  26076519 atcttgttggagatgccttcgactatcttctcaataaacttgcattcagatctattcatgtccaataaggtaagttagaacatacactagaatcaaaatc 26076420  T
Q  134 acatccatgtactcataatatgttatacatttctaactatttcgacatataaataactaatacttgtttaaaaac 208  Q
    ||||||||||| | ||||||| |||| || |||||||| ||| ||||||||||||||| | ||| |||| |||||    
T  26076419 acatccatgtattgataatatattatgcaattctaacttttttgacatataaataacttacactagttttaaaac 26076345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 302 - 432
Target Start/End: Complemental strand, 25580081 - 25579951
Alignment:
Q  302 tttaagtaatgttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgtta 401  Q
    ||||||||| || ||||||||| ||||||||| ||| |||||||||||||||||||| ||| | | ||| |  |||||| |  |||| | |||||||||     
T  25580081 tttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagctatcttccattgacgcaatcgctccatgttt 25579982  T
Q  402 ttcttatcattttgaaacctcttttcatgct 432  Q
    ||||  | |||||||||||||| ||||||||    
T  25579981 ttctcgttattttgaaacctctcttcatgct 25579951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 302 - 432
Target Start/End: Complemental strand, 26143227 - 26143097
Alignment:
Q  302 tttaagtaatgttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgtta 401  Q
    ||||||||| || ||||||||| ||||||||| ||| |||||||||||||||||||| ||| | | ||| |  |||||| |  |||| | |||||||||     
T  26143227 tttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctccatgttt 26143128  T
Q  402 ttcttatcattttgaaacctcttttcatgct 432  Q
    ||||  | |||||||||||||| ||||||||    
T  26143127 ttctcgttattttgaaacctctcttcatgct 26143097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 69 - 219
Target Start/End: Complemental strand, 27215046 - 27214894
Alignment:
Q  69 ataagcttgtattcatatctattcatgtgcaataagataagttagt--atctaacaacatcacaatcacatccatgtactcataatatgttatacatttc 166  Q
    |||| ||||||||||||||| || |||| |||||||||||||||||  ||  | ||||||||  |||| ||||||||||| | | | | ||||| | |||    
T  27215046 ataaacttgtattcatatctgttaatgtccaataagataagttagtgcatacaccaacatcaatatcagatccatgtactgagattgtattatataattc 27214947  T
Q  167 taactatttcgacatataaataactaatacttgtttaaaaacgtatataaaaa 219  Q
    ||||  |||  |||||||||  ||| |||||||||||||||| ||||||||||    
T  27214946 taacccttttcacatataaaacacttatacttgtttaaaaacatatataaaaa 27214894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 208
Target Start/End: Complemental strand, 25483683 - 25483512
Alignment:
Q  39 ttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatcta-ac-aacatcacaatcaca 136  Q
    |||||||||||| ||  |||||||||  | |||| ||||| ||||||||||||||||| |||||||||||||||| |  || || || | || ||||| |    
T  25483683 ttgttggagatgtattggactatcttctcaataaacttgtgttcatatctattcatgtccaataagataagttagaacatacactaaaaccaaaatcata 25483584  T
Q  137 tccatgtactcataatatgttatacatttctaactatttcgacatataaataactaatacttgtttaaaaac 208  Q
    |||||| | | | ||||| | || || |||||||| ||| ||||||||||||||| | |||||||| |||||    
T  25483583 tccatgcattgagaatatatcatgcaattctaacttttttgacatataaataacttacacttgttttaaaac 25483512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 454
Target Start/End: Complemental strand, 27214769 - 27214630
Alignment:
Q  315 gggtacccaggaggactatcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcatttt 414  Q
    |||||| ||| |||||||| ||| ||||| || ||||||||||| ||| | | ||| |  ||||||  |||||||| ||||||||| | ||| | |||||    
T  27214769 gggtactcagaaggactataatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttatttt 27214670  T
Q  415 gaaacctcttttcatgctcagccaatgcttcaccataact 454  Q
    ||||||||| |||||||| ||| |  ||||||||||||||    
T  27214669 gaaacctctcttcatgcttagcaagcgcttcaccataact 27214630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 454
Target Start/End: Original strand, 27234459 - 27234598
Alignment:
Q  315 gggtacccaggaggactatcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcatttt 414  Q
    |||||| ||| |||||||| ||| ||||| || ||||||||||| ||| | | ||| |  ||||||  |||||||| ||||||||| | ||| | |||||    
T  27234459 gggtactcagaaggactataatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttatttt 27234558  T
Q  415 gaaacctcttttcatgctcagccaatgcttcaccataact 454  Q
    ||||||||| |||||||| ||| |  ||||||||||||||    
T  27234559 gaaacctctcttcatgcttagcaagcgcttcaccataact 27234598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 25580346 - 25580272
Alignment:
Q  39 ttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttag 113  Q
    ||||||||||||  |  |||||||||  | |||| ||||||||||||||||||| ||| ||||||||||||||||    
T  25580346 ttgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcgtgtccaataagataagttag 25580272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 358
Target Start/End: Complemental strand, 26056290 - 26056232
Alignment:
Q  300 gatttaagtaatgttgggtacccaggaggactatcatggtagccggacaagttagcagc 358  Q
    ||||||||||| || |||||| || ||||||||| ||| ||||||||||||||||||||    
T  26056290 gatttaagtaaagtagggtactcatgaggactataatgatagccggacaagttagcagc 26056232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 358
Target Start/End: Complemental strand, 26076260 - 26076202
Alignment:
Q  300 gatttaagtaatgttgggtacccaggaggactatcatggtagccggacaagttagcagc 358  Q
    ||||||||||| || |||||| || ||||||||| ||| ||||||||||||||||||||    
T  26076260 gatttaagtaaagtagggtactcatgaggactataatgatagccggacaagttagcagc 26076202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 468
Target Start/End: Original strand, 28098302 - 28098360
Alignment:
Q  410 attttgaaacctcttttcatgctcagccaatgcttcaccataactacctgtctgatgtc 468  Q
    |||||| ||||||| |||||||| ||| ||||||||||||||||| || ||||||||||    
T  28098302 attttggaacctctcttcatgcttagctaatgcttcaccataactccccgtctgatgtc 28098360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 25511565 - 25511488
Alignment:
Q  36 atcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttag 113  Q
    |||||||||||||||  |  |||||||||  | |||| |||||||||| |||||||||||| ||||||| ||||||||    
T  25511565 atcttgttggagatgtcttcgactatcttctcaataaacttgtattcagatctattcatgtccaataaggtaagttag 25511488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 26884677 - 26884621
Alignment:
Q  56 gactatctttcctataagcttgtattcatatctattcatgtgcaataagataagtta 112  Q
    ||||||||| || |||| || |||||| ||||||||||||| |||||||||||||||    
T  26884677 gactatcttcccgataaactcgtattcgtatctattcatgtccaataagataagtta 26884621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 25506704 - 25506779
Alignment:
Q  178 acatataaataactaatacttgtttaaaaacgtata-taaaaacggtatttctcatttaacctttaagatgagatt 252  Q
    |||||||||||||| |||||||||||||||| | || ||||||  || ||||  |||||| |||||||||||||||    
T  25506704 acatataaataacttatacttgtttaaaaacttttactaaaaaaagtgtttcctatttaaactttaagatgagatt 25506779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 468
Target Start/End: Complemental strand, 31284535 - 31284484
Alignment:
Q  417 aacctcttttcatgctcagccaatgcttcaccataactacctgtctgatgtc 468  Q
    ||||||| |||||||| |||||||||||| |||||||||||| | |||||||    
T  31284535 aacctctcttcatgcttagccaatgcttctccataactacctctatgatgtc 31284484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 456
Target Start/End: Original strand, 25506897 - 25506963
Alignment:
Q  390 ctctccatgttattcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactac 456  Q
    ||||||||||| ||||||| |||||||||| ||| |||||||| || ||   |||||||||||||||    
T  25506897 ctctccatgtttttcttattattttgaaacttctcttcatgcttagtcagatcttcaccataactac 25506963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 432
Target Start/End: Complemental strand, 26656318 - 26656221
Alignment:
Q  335 atggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcattttgaaacctcttttcatgct 432  Q
    ||||||||| |||||||| ||||| | | ||| |||||  |||||| ||| |||||||| |||||| | ||| | |||||| ||| ||||||||||||    
T  26656318 atggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttggaacttcttttcatgct 26656221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 432
Target Start/End: Complemental strand, 26762289 - 26762192
Alignment:
Q  335 atggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcattttgaaacctcttttcatgct 432  Q
    ||||||||| |||||||| ||||| | | ||| |||||  |||||| ||| |||||||| |||||| | ||| | |||||| ||| ||||||||||||    
T  26762289 atggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttggaacttcttttcatgct 26762192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 31284864 - 31284823
Alignment:
Q  70 taagcttgtattcatatctattcatgtgcaataagataagtt 111  Q
    ||||||||||||||||||||||||||  ||| ||||||||||    
T  31284864 taagcttgtattcatatctattcatgcccaacaagataagtt 31284823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 25482104 - 25482048
Alignment:
Q  302 tttaagtaatgttgggtacccaggaggactatcatggtagccggacaagttagcagc 358  Q
    ||||||||| || |||||| || ||||||||| ||| ||||||||||| ||||||||    
T  25482104 tttaagtaaagtggggtactcatgaggactataatgatagccggacaaattagcagc 25482048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 372
Target Start/End: Complemental strand, 26646838 - 26646771
Alignment:
Q  302 tttaagtaatgttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcaaagcca 372  Q
    ||||||||| || ||||||||||||   |||| |||||| ||||||||||||||||| ||| ||| |||||    
T  26646838 tttaagtaaagtggggtacccagga---ctataatggtatccggacaagttagcagcttgggtcagagcca 26646771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 372
Target Start/End: Complemental strand, 26752806 - 26752739
Alignment:
Q  302 tttaagtaatgttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcaaagcca 372  Q
    ||||||||| || ||||||||||||   |||| |||||| ||||||||||||||||| ||| ||| |||||    
T  26752806 tttaagtaaagtggggtacccagga---ctataatggtatccggacaagttagcagcttgggtcagagcca 26752739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 128; Significance: 6e-66; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 60213 - 59983
Alignment:
Q  19 gtaagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatct 118  Q
    |||||| ||| ||||| ||||||||||||||| || ||||||||||||| ||||||| |||||||||||||||||||| |||||| |||||||||||| |    
T  60213 gtaaggactgtcgactgatcttgttggagatgtatttgactatctttccaataagctcgtattcatatctattcatgtccaataatataagttagtatgt 60114  T
Q  119 aacaacat--cacaatcacatccatgtactcataatatgttatacatttctaactatttcgacatataaataactaatacttgtttaaaaacgtatataa 216  Q
    ||||||||  |||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||| | |||||||||||| || ||||    
T  60113 aacaacatcacacaatcacatccatgtactcataatatattatacatttttaactattttgacatataaataactaacaattgtttaaaaacataaataa 60014  T
Q  217 aaacggtatttctcatttaacctttaagatg 247  Q
    ||| ||| || | ||||||  ||||||||||    
T  60013 aaaaggtgttacacatttaggctttaagatg 59983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 332 - 468
Target Start/End: Complemental strand, 59902 - 59766
Alignment:
Q  332 atcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcattttgaaacctcttttcatgc 431  Q
    ||||||||||| || ||||||||||||| | |||| ||||| ||||||| ||||||||||||||||||| ||| |||||||||||||||| |||||||||    
T  59902 atcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacctattttcatgc 59803  T
Q  432 tcagccaatgcttcaccataactacctgtctgatgtc 468  Q
    ||||||||||||| |||||| |||||||| |||||||    
T  59802 tcagccaatgctttaccatacctacctgtatgatgtc 59766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 6e-66; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 18074405 - 18074175
Alignment:
Q  19 gtaagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatct 118  Q
    |||||| ||| ||||| ||||||||||||||| || ||||||||||||| ||||||| |||||||||||||||||||| |||||| |||||||||||| |    
T  18074405 gtaaggactgtcgactgatcttgttggagatgtatttgactatctttccaataagctcgtattcatatctattcatgtccaataatataagttagtatgt 18074306  T
Q  119 aacaacat--cacaatcacatccatgtactcataatatgttatacatttctaactatttcgacatataaataactaatacttgtttaaaaacgtatataa 216  Q
    ||||||||  |||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||| | |||||||||||| || ||||    
T  18074305 aacaacatcacacaatcacatccatgtactcataatatattatacatttttaactattttgacatataaataactaacaattgtttaaaaacataaataa 18074206  T
Q  217 aaacggtatttctcatttaacctttaagatg 247  Q
    ||| ||| || | ||||||  ||||||||||    
T  18074205 aaaaggtgttacacatttaggctttaagatg 18074175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 18655011 - 18655211
Alignment:
Q  19 gtaagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatct 118  Q
    |||||||||| ||||| |||||||||||||   || ||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| | ||| | |    
T  18655011 gtaagggctgacgactgatcttgttggagacatatttgactatctttccaataaacttgtattcatatctattcatgtccaataagataaatcagtgtgt 18655110  T
Q  119 aacaacatcacaatcacatccatgtactcataatatgttatacatttctaactatttcgacatataaataactaatacttgtttaaaaacgtatataaaa 218  Q
    |||||||||||| |||||||||| |||||||||||| | |||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| ||||||    
T  18655111 aacaacatcacagtcacatccatttactcataatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaatgtaaataaaa 18655210  T
Q  219 a 219  Q
    |    
T  18655211 a 18655211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 18723619 - 18723819
Alignment:
Q  19 gtaagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatct 118  Q
    |||||||||| ||||| |||||||||  ||   || ||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||| ||||| |    
T  18723619 gtaagggctgacgactgatcttgttgttgacatatttgactatctttccaataaacttgtattcatatctattcatgtccaataagataagtcagtatgt 18723718  T
Q  119 aacaacatcacaatcacatccatgtactcataatatgttatacatttctaactatttcgacatataaataactaatacttgtttaaaaacgtatataaaa 218  Q
    |||||||||||| |||||||||| |||||||||||| | |||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| ||||||    
T  18723719 aacaacatcacagtcacatccatttactcataatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaatgtaaataaaa 18723818  T
Q  219 a 219  Q
    |    
T  18723819 a 18723819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 18731038 - 18731226
Alignment:
Q  19 gtaagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatct 118  Q
    |||||||||| ||||| |||||||||||||   || ||||||||||| | |||| ||||||||||||||||||||||| ||||||||||||| ||||| |    
T  18731038 gtaagggctgacgactgatcttgttggagacatatttgactatcttttcaataaacttgtattcatatctattcatgtccaataagataagtcagtatgt 18731137  T
Q  119 aacaacatcacaatcacatccatgtactcataatatgttatacatttctaactatttcgacatataaataactaatacttgtttaaaaa 207  Q
    |||||||||||| |||||||||||| |||||||||| | |||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  18731138 aacaacatcacagtcacatccatgtcctcataatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaa 18731226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 18698934 - 18699126
Alignment:
Q  19 gtaagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatct 118  Q
    |||||||||| ||||| ||||||||||||| | || ||||||| | ||| |||| ||||||||||||||||||||||| ||||||||||| | ||| | |    
T  18698934 gtaagggctgacgactgatcttgttggagacgtatttgactatatctccaataaacttgtattcatatctattcatgtccaataagataaatcagtgtgt 18699033  T
Q  119 aacaacatcacaatcacatccatgtactcataatatgttatacatttctaactatttcgacatataaataactaatacttgtttaaaaacgta 211  Q
    |||||||||||| |||||||||||| |||||| ||| | |||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  18699034 aacaacatcacagtcacatccatgtcctcatagtatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaacgta 18699126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 18679094 - 18679301
Alignment:
Q  19 gtaagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatct 118  Q
    |||||||||| ||||| |||||||| |||| | || ||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||| ||||| |    
T  18679094 gtaagggctgccgactgatcttgttagagacgtatttgactatctctccaataaacttgtattcatatctattcatgtccaataagataagtcagtatgt 18679193  T
Q  119 aacaacatcacaatcacatccatgtactcataatatgttatacatttct-------aactatttcgacatataaataactaatacttgtttaaaaacgta 211  Q
    |||||||||||| ||||| ||||||||||||||||| | ||||||||||       |||||||| ||| |||||||||||||||||||||||||||||||    
T  18679194 aacaacatcacagtcacacccatgtactcataatatatcatacatttctaaattcaaactattttgacttataaataactaatacttgtttaaaaacgta 18679293  T
Q  212 tataaaaa 219  Q
     |||||||    
T  18679294 aataaaaa 18679301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 332 - 468
Target Start/End: Complemental strand, 18074094 - 18073958
Alignment:
Q  332 atcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcattttgaaacctcttttcatgc 431  Q
    ||||||||||| || ||||||||||||| | |||| ||||| ||||||| ||||||||||||||||||| ||| |||||||||||||||| |||||||||    
T  18074094 atcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacctattttcatgc 18073995  T
Q  432 tcagccaatgcttcaccataactacctgtctgatgtc 468  Q
    ||||||||||||| |||||| |||||||| |||||||    
T  18073994 tcagccaatgctttaccatacctacctgtatgatgtc 18073958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 426
Target Start/End: Original strand, 18731349 - 18731440
Alignment:
Q  335 atggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcattttgaaacctctttt 426  Q
    |||||||||||||||||||||||| | | ||| |||||  |||||| | ||||||| ||||||||| ||||| | |||||| || |||||||    
T  18731349 atggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtttttcttgttattttggaaactctttt 18731440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 326 - 415
Target Start/End: Original strand, 18655313 - 18655402
Alignment:
Q  326 aggactatcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcattttg 415  Q
    |||||||  |||||||||||||||||||||||| | | ||| |||||  |||||| | ||||||| ||||||||| ||||| | ||||||    
T  18655313 aggactagaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtttttcttgttattttg 18655402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 326 - 415
Target Start/End: Original strand, 18723921 - 18724010
Alignment:
Q  326 aggactatcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcattttg 415  Q
    |||||||  |||||||||||||||||||||||| | | ||| |||||  |||||| | ||||||| ||||||||| ||||| | ||||||    
T  18723921 aggactaaaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtttttcttgttattttg 18724010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 425
Target Start/End: Original strand, 18699245 - 18699335
Alignment:
Q  335 atggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcattttgaaacctcttt 425  Q
    |||||||||||||||||||||||| | | ||| ||| |  |||||| | ||||||| ||||||||| ||||| | |||||| || ||||||    
T  18699245 atggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtttttcttgttattttggaaactcttt 18699335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 121; Significance: 8e-62; HSPs: 4)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 316 - 468
Target Start/End: Original strand, 14195 - 14347
Alignment:
Q  316 ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcattttg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||| |||||||||||||||||| |||  |||||||||    
T  14195 ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgtttttcggatcattttg 14294  T
Q  416 aaacctcttttcatgctcagccaatgcttcaccataactacctgtctgatgtc 468  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14295 aaacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtc 14347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 316 - 458
Target Start/End: Original strand, 3259 - 3402
Alignment:
Q  316 ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatg-ttattcttatcatttt 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| || |||  ||||||||    
T  3259 ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgttttttcggatcatttt 3358  T
Q  415 gaaacctcttttcatgctcagccaatgcttcaccataactacct 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3359 gaaacctcttttcatgctcagccaatgcttcaccataactacct 3402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 3077 - 3196
Alignment:
Q  19 gtaagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatct 118  Q
    ||||||| || |||||  |||||||||||||| || ||||||||| ||| |||| || |||||||||||||||||||| || |||||||||||||||| |    
T  3077 gtaagggttgacgactggtcttgttggagatgtatttgactatctctccaataaactcgtattcatatctattcatgtccagtaagataagttagtatgt 3176  T
Q  119 aacaacatcacaatcacatc 138  Q
     |||||||||||||||||||    
T  3177 gacaacatcacaatcacatc 3196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 14082 - 14135
Alignment:
Q  90 ttcatgtgcaataagataagttagtatctaacaacatcacaatcacatccatgt 143  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||    
T  14082 ttcatgtccaataagataagttagtatgtgacaacatcacaatcacatccatgt 14135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 8131 - 7902
Alignment:
Q  19 gtaagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatct 118  Q
    |||||||||| ||||| ||||||||||||||| || ||||||| |  || |||| |||||||||||||||||||||||   ||||||||||||||||| |    
T  8131 gtaagggctgacgactgatcttgttggagatgtatttgactatatcgccaataaacttgtattcatatctattcatgtcatataagataagttagtatgt 8032  T
Q  119 aacaacatcacaatcacatccatgtactcataatatgttatacatttctaactatttcgacatataaataact-aatacttgtttaaaaacgtatataaa 217  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||||||||||||| |||||| || ||| | |||||||||||||||||||| ||| |    
T  8031 aacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaagtaattaaatacttgtttaaaaacgtaaataga 7932  T
Q  218 aacggtatttctcatttaacctttaagatg 247  Q
    ||  || |||| ||||||  ||||||||||    
T  7931 aaaagtgtttcccatttaggctttaagatg 7902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 335 - 468
Target Start/End: Complemental strand, 7854 - 7721
Alignment:
Q  335 atggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcattttgaaacctcttttcatgctca 434  Q
    |||||||||||||||||||||||| ||| ||| |||||  |||||| | ||||| | |||||||||||||||||||||||||||||||||||||||  ||    
T  7854 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaacctcttttcatgtcca 7755  T
Q  435 gccaatgcttcaccataactacctgtctgatgtc 468  Q
    ||||||||||||||||||| |||||| |||||||    
T  7754 gccaatgcttcaccataacgacctgtatgatgtc 7721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 110; Significance: 3e-55; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 13213 - 13442
Alignment:
Q  19 gtaagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatct 118  Q
    |||||||||| ||||| ||||||||||||||| || ||||||| |  || |||| |||||||||||||||||||||||   ||||||||||||||||| |    
T  13213 gtaagggctgacgactgatcttgttggagatgtatttgactatatcgccaataaacttgtattcatatctattcatgtcatataagataagttagtatgt 13312  T
Q  119 aacaacatcacaatcacatccatgtactcataatatgttatacatttctaactatttcgacatataaataact-aatacttgtttaaaaacgtatataaa 217  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||||||||||||| |||||| || ||| | |||||||||||||||||||| ||| |    
T  13313 aacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaagtaattaaatacttgtttaaaaacgtaaataga 13412  T
Q  218 aacggtatttctcatttaacctttaagatg 247  Q
    ||  || |||| ||||||  ||||||||||    
T  13413 aaaagtgtttcccatttaggctttaagatg 13442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 4250 - 4481
Alignment:
Q  19 gtaagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagtatct 118  Q
    ||||||||||  |||| |||||||||||||||    ||||||||| ||| |||| |||||||||||||||||| |||| | ||||||||||||||||| |    
T  4250 gtaagggctgatgactgatcttgttggagatgttcttgactatctctccaataaacttgtattcatatctattaatgtccgataagataagttagtatgt 4349  T
Q  119 aacaacatcacaatcacatccatgtactcata--atatgttatacatttctaactatttcgacatataaataact-aatacttgtttaaaaacgtatata 215  Q
    ||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||  |||||| || ||| | |||||||||||||||||||| |||    
T  4350 aacaacatcacaatcacatccatgtactcataatatatggtatacatttctaactattgtgacataaaagtaattaaatacttgtttaaaaacgtaaata 4449  T
Q  216 aaaacggtatttctcatttaacctttaagatg 247  Q
     ||| ||| |||| ||||||  ||||||||||    
T  4450 taaaaggtgtttcccatttaggctttaagatg 4481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 335 - 468
Target Start/End: Original strand, 4529 - 4662
Alignment:
Q  335 atggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcattttgaaacctcttttcatgctca 434  Q
    |||||||||||||||||||||||| ||| ||| |||||  |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4529 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttattcttatcattttgaaacctcttttcatgctca 4628  T
Q  435 gccaatgcttcaccataactacctgtctgatgtc 468  Q
    |||||||||||||||||||||||| || ||||||    
T  4629 gccaatgcttcaccataactacctttcagatgtc 4662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 335 - 468
Target Start/End: Original strand, 13490 - 13623
Alignment:
Q  335 atggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcattttgaaacctcttttcatgctca 434  Q
    |||||||||||||||||||||||| ||| ||| |||||  |||||| | ||||| | |||||||||||||||||||||||||||||||||||||||  ||    
T  13490 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaacctcttttcatgtcca 13589  T
Q  435 gccaatgcttcaccataactacctgtctgatgtc 468  Q
    ||||||||||||||||||| |||||| |||||||    
T  13590 gccaatgcttcaccataacgacctgtatgatgtc 13623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 9e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 267878 - 268090
Alignment:
Q  19 gtaagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagta--- 115  Q
    |||||||||  ||||| ||||||||||||||| || ||||||||| ||| |||| |||||||||||||||||||||||  |||||   |||||||||       
T  267878 gtaagggctcacgactgatcttgttggagatgtatttgactatctctccaataaacttgtattcatatctattcatgtcaaataatgcaagttagtaata 267977  T
Q  116 ---tctaacaacatcaca--atcacatccatg----tactcataatatgttatacatttctaactatttcgacatataaataactaatacttgtttaaaa 206  Q
       | |||||||||||||  ||||||||||||    |||||| ||||| |||||| ||||||||||||||| |||||||| ||||||||||| |||| ||    
T  267978 gtatgtaacaacatcacacaatcacatccatgcatgtactcaaaatatattatacgtttctaactatttcgtcatataaacaactaatacttatttagaa 268077  T
Q  207 acgtatataaaaa 219  Q
    ||||| |||||||    
T  268078 acgtaaataaaaa 268090  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 327 - 465
Target Start/End: Original strand, 28127516 - 28127654
Alignment:
Q  327 ggactatcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcattttgaaacctctttt 426  Q
    ||||||| |||||||||||||||||||||||| ||| | | ||| |  |||||| | ||||| | ||||||||| ||||| | |||||| ||||||| |     
T  28127516 ggactataatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacctctctc 28127615  T
Q  427 catgctcagccaatgcttcaccataactacctgtctgat 465  Q
    |||||| ||| |   ||||||||||||| ||||| ||||    
T  28127616 catgcttagcaagctcttcaccataactccctgtatgat 28127654  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 254
Target Start/End: Original strand, 28164048 - 28164137
Alignment:
Q  165 tctaactatttcgacatataaataactaatacttgtttaaaaacgtatataaaaacggtatttctcatttaacctttaagatgagattat 254  Q
    ||||||||||| |||||||||||| || |||||||||||||||| || ||||| |   |||||   |||||| |||||||||||| ||||    
T  28164048 tctaactattttgacatataaatatcttatacttgtttaaaaacataaataaataaaatattttctatttaagctttaagatgaggttat 28164137  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 423
Target Start/End: Original strand, 28164200 - 28164296
Alignment:
Q  327 ggactatcatggtagccggacaagttagcagcctggctcaaagccagtttccatcgctgcaacctctccatgttattcttatcattttgaaacctct 423  Q
    ||||||| |||||||||||||||||||||||| ||| | | ||| |  |||||| | ||||| | ||||||||| ||||| | |||||| |||||||    
T  28164200 ggactataatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacctct 28164296  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 28127263 - 28127308
Alignment:
Q  69 ataagcttgtattcatatctattcatgtgcaataagataagttagt 114  Q
    |||| |||||||||||||||||| || | |||||||||||||||||    
T  28127263 ataaacttgtattcatatctattaatctccaataagataagttagt 28127308  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 28127339 - 28127400
Alignment:
Q  156 ttatacatttctaactatttcgacatataaataactaatacttgtttaaaaacgtatataaa 217  Q
    |||||||  ||| ||||||| |||||||||||| || |||||||||||||||| || |||||    
T  28127339 ttatacaactctgactattttgacatataaataccttatacttgtttaaaaacataaataaa 28127400  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 29273376 - 29273472
Alignment:
Q  19 gtaagggctggcgactaatcttgttggagatgcatctgactatctttcctataagcttgtattcatatctattcatgtgcaataagataagttagta 115  Q
    ||||||||  ||| || ||||||||||||||| || ||||||||| ||| |||| |||||||||||||||||||||||  ||||| | |||||||||    
T  29273376 gtaagggcacgcggctgatcttgttggagatgtatttgactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagta 29273472  T

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