View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11028_low_10 (Length: 250)
Name: NF11028_low_10
Description: NF11028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11028_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 22 - 238
Target Start/End: Original strand, 11058214 - 11058430
Alignment:
| Q |
22 |
atgggcttcgaagaagtagtttgctacaaagactcttctctctaaatcaatcttatcaaggcatccaccaacaagtttcactaatatgttgtgtttattc |
121 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
11058214 |
atgggcttcaaagaagtagtttgcaacaaagactcttccctctaaatcaatcttatcaaggcatccgccaacaagtttcactagtatgttgtgtttattc |
11058313 |
T |
|
| Q |
122 |
aagacattaaaga-ttgcttcacaaaaaattatttttaaagtctttcacattgctttgtgaaggtaatcaatatattaagttcatggctatgttttgtcc |
220 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||| |||||||||||||||||| ||| |
|
|
| T |
11058314 |
aagacattaaagatttgctccacaaaaaattatttttaaagtctttcaca-tgctttgtgaaggcaatcaatacattgagttcatggctatgttttatcc |
11058412 |
T |
|
| Q |
221 |
atcgttgttcacgcttct |
238 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
11058413 |
attgttgttcacgcttct |
11058430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University