View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11028_low_11 (Length: 219)

Name: NF11028_low_11

Description: NF11028

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11028_low_11

[»] chr3 (1 HSPs)

[»] chr1 (1 HSPs)

Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 169; E-Value: 8e-91

Query Start/End: Original strand, 19 - 211

Target Start/End: Original strand, 11751748 - 11751940

Alignment:

Q	19	atacagctgatactatcaaaaacagcttcaatgtcgtggctgttcatcctcaagacaggatggttcgctggaatagttttaatcacagttgtcatgtgct	118	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	11751748	atacagctgatactatcaaaaacagcttcaatgtcgtggctgttcatcctcaagacaggatggttcgctggaatagttttaatcacagttgtcatgtgct	11751847	T

Q	119	aaatgtggagagtggctgtctaggagtgccaattcgagctggttatgtaggtgttattcgaaattctacagggttctatctctctgcttctcc	211	Q
		\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|
T	11751848	aaatgtggatagtagctgtctaggagtgccaattcgagctggttatgtaggtgttattcgatattttacagggttctatctctcgggttctcc	11751940	T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 35; E-Value: 0.00000000008

Query Start/End: Original strand, 108 - 202

Target Start/End: Complemental strand, 7446274 - 7446180

Alignment:

Q	108	tgtcatgtgctaaatgtggagagtggctgtctaggagtgccaattcgagctggttatgtaggtgttattcgaaattctacagggttctatctctc	202	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\| \| \|\|\| \|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	7446274	tgtcatgtgcttaatgtggacggtagttgtttaggtgtgcccattcgagctggttttggtggagttattcgcaattctgcaggtttctatctctc	7446180	T

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