View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11028_low_12 (Length: 212)

Name: NF11028_low_12
Description: NF11028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11028_low_12
NF11028_low_12
[»] chr8 (2 HSPs)
chr8 (101-195)||(14160249-14160343)
chr8 (54-102)||(14160167-14160215)
[»] chr7 (3 HSPs)
chr7 (101-195)||(29705634-29705728)
chr7 (54-102)||(29705552-29705600)
chr7 (22-54)||(39657984-39658016)
[»] chr6 (2 HSPs)
chr6 (101-195)||(21423398-21423492)
chr6 (54-102)||(21423316-21423364)
[»] chr1 (1 HSPs)
chr1 (14-53)||(48938851-48938890)
[»] chr3 (1 HSPs)
chr3 (22-54)||(8234007-8234039)
[»] chr2 (1 HSPs)
chr2 (22-54)||(11314361-11314393)
[»] chr4 (1 HSPs)
chr4 (22-53)||(42725237-42725268)


Alignment Details
Target: chr8 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 14160249 - 14160343
Alignment:
Q  101 tggaaccttatgtctttttgtatgcagctcttgtactgcctttatgatggaattttattactttcgaactttatgtcgttttgtaagcagcttgt 195  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||    
T  14160249 tggaacctaatgtctttttgtatgcagctcttgtactgcctttatgttggaattttattactttcaaaccttatgtcgttttgtaagcagcttgt 14160343  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 14160167 - 14160215
Alignment:
Q  54 aaagatgaaaatatggaggccatgatattggatgacagtttgtttaatg 102  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14160167 aaagatgaaaatatggaggccatgatatttgatgacagtttgtttaatg 14160215  T

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Target: chr7 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 29705634 - 29705728
Alignment:
Q  101 tggaaccttatgtctttttgtatgcagctcttgtactgcctttatgatggaattttattactttcgaactttatgtcgttttgtaagcagcttgt 195  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||    
T  29705634 tggaacctaatgtctttttgtatgcagctcttgtactgcctttatgttggaattttattactttcaaaccttatgtcgttttgtaagcagcttgt 29705728  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 29705552 - 29705600
Alignment:
Q  54 aaagatgaaaatatggaggccatgatattggatgacagtttgtttaatg 102  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29705552 aaagatgaaaatatggaggccatgatatttgatgacagtttgtttaatg 29705600  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 39657984 - 39658016
Alignment:
Q  22 gagtgcaaaagcgcctgtcgctagcactgctca 54  Q
    |||||||||||||||||||||||||||||||||    
T  39657984 gagtgcaaaagcgcctgtcgctagcactgctca 39658016  T

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Target: chr6 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 21423398 - 21423492
Alignment:
Q  101 tggaaccttatgtctttttgtatgcagctcttgtactgcctttatgatggaattttattactttcgaactttatgtcgttttgtaagcagcttgt 195  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||    
T  21423398 tggaacctaatgtctttttgtatgcagctcttgtactgcctttatgttggaattttattactttcaaaccttatgtcgttttgtaagcagcttgt 21423492  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 21423316 - 21423364
Alignment:
Q  54 aaagatgaaaatatggaggccatgatattggatgacagtttgtttaatg 102  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21423316 aaagatgaaaatatggaggccatgatatttgatgacagtttgtttaatg 21423364  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 48938890 - 48938851
Alignment:
Q  14 gcataggcgagtgcaaaagcgcctgtcgctagcactgctc 53  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48938890 gcataggcgagtgcaaaagcgcctgtcgctagcactgctc 48938851  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 8234039 - 8234007
Alignment:
Q  22 gagtgcaaaagcgcctgtcgctagcactgctca 54  Q
    |||||||||||||||||||||||||||||||||    
T  8234039 gagtgcaaaagcgcctgtcgctagcactgctca 8234007  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 11314361 - 11314393
Alignment:
Q  22 gagtgcaaaagcgcctgtcgctagcactgctca 54  Q
    |||||||||||||||||||||||||||||||||    
T  11314361 gagtgcaaaagcgcctgtcgctagcactgctca 11314393  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 53
Target Start/End: Original strand, 42725237 - 42725268
Alignment:
Q  22 gagtgcaaaagcgcctgtcgctagcactgctc 53  Q
    ||||||||||||||||||||||||||||||||    
T  42725237 gagtgcaaaagcgcctgtcgctagcactgctc 42725268  T

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