View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11028_low_3 (Length: 424)
Name: NF11028_low_3
Description: NF11028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11028_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 8 - 405
Target Start/End: Original strand, 7499924 - 7500321
Alignment:
| Q |
8 |
agagagaagaaggaaaacacatccaatccaattaccacaattgttctaaccatgaaaacctagtagatttaaatgaaatatttaagaattggtataaacc |
107 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7499924 |
agagtgaagaagtaaaacacatccaatccaattaccacaattgttctaaccatgaaaacctagtagatttaaatgaaatatttaaaaattggtataaacc |
7500023 |
T |
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| Q |
108 |
ttttcaatcaaatataatcctctctccattttgaattgcattcacgagattaatgccagcttgcctccccagttctccggtcatacgctctattccaaac |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7500024 |
ttttcaatcaaatataatcctctctccattttgaattgcattcacgagattaatgccagcttgcctccccagttctccggtcatatgctctattccaaac |
7500123 |
T |
|
| Q |
208 |
tcaacaatcctcacgtacaaccgatctcctccacctttccagcggcacgtgacattcacctgccatttttgccccaacatcatggtggagtaccccacct |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7500124 |
acaacaatcctcacgtacaaccgatctcctccacctttccagcggcacgtgacattcacctgccatttttgccccaacatcatggtggagtaccccacct |
7500223 |
T |
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| Q |
308 |
caatcttcgtcaacatctggttaacccaaagaggtttacaactagaatgaaacaagcctgcagcacggttttgtattgtgtcgataactacccaactc |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7500224 |
caatcttcgtcaacatctggttaacccaaagaggtttacaactagaatgaaacaagcctgcagcacggttttgtattgtgtcgataactacccaactc |
7500321 |
T |
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