View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11028_low_4 (Length: 399)
Name: NF11028_low_4
Description: NF11028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11028_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 17 - 388
Target Start/End: Original strand, 41544843 - 41545214
Alignment:
| Q |
17 |
ctaatgaatttggtgacttcaatattttcttatcagacaagagaaaaattaaagccatgttgcttaggtgctacctgcaaagggaggtcccagaatggag |
116 |
Q |
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| T |
41544843 |
ctaatgaatttggtgacttcaatattttcttatcagacaagagaaaaattaaagccatgttgcttaggtgctacctgcaaagggaggtcccagaatggag |
41544942 |
T |
|
| Q |
117 |
gtaatattatatatacattccatctgtctttttgttcaactggtttgagattttatagcatgtgtcttatgttaatgttttgttatgaaggttggagctt |
216 |
Q |
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| T |
41544943 |
gtaatattatatatacattccatctgtctttttgttcaactggtttgagattttatagcatgtgtcttatgttaatgttttgttatgaaggttggagctt |
41545042 |
T |
|
| Q |
217 |
agaatgatgttgcagaaaggagtgaagtttgaaatcgaagcactatctgttcatacactttcattcttgacagagtcttatataccatccaaaattcatg |
316 |
Q |
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| T |
41545043 |
agaatgatgttgcagaaaggagtgaagtttgaaatcgaagcactatctgttcatacactttcattcttgacagagtcttatataccatccaaaattcatg |
41545142 |
T |
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| Q |
317 |
gtaaagttaaaatatagcttgttgtacacttgtgttttaaatcccaaaacaagcaattgggcttgcgttcat |
388 |
Q |
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| T |
41545143 |
gtaaagttaaaatatagcttgttgtacacttgtgttttaaatcccaaaacaagcaattgggcttgcgttcat |
41545214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 356
Target Start/End: Original strand, 41561021 - 41561348
Alignment:
| Q |
17 |
ctaatgaatttggtgacttcaatattttcttatcagacaagagaaaaattaaagccatgttgcttaggtgctacctgcaaagggaggtcccagaatggag |
116 |
Q |
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| T |
41561021 |
ctaatcaatatggtgacttcaatatt--cttattagacaagagaaaaattgaagccatgttgcttaggtgctacctgcaaagggaggtgccacaatggag |
41561118 |
T |
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| Q |
117 |
gtaatattatatatacattccatctgtctttttgttcaactggtttgagattttatagcatgtgtcttatgttaatgttttgttatgaaggttggagctt |
216 |
Q |
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|||| ||| ||| |||||| ||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
41561119 |
gtaacatt-tatttacattacatctgtct---------actggtttgagattttatagcatgcgtcttttgttaatgttttgttatgaaggttggagctc |
41561208 |
T |
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| Q |
217 |
agaatgatgttgcagaaaggagtgaagtttgaaatcgaagcactatctgttcatacactttcattcttgacagagtcttatataccatccaaaattcatg |
316 |
Q |
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| T |
41561209 |
aaaatgatgttgcagaaaggagtgaagtttgaaatcgaagcactgtctgttcatacactttcattcttgacagagtcttatataccatccaaaattcatg |
41561308 |
T |
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| Q |
317 |
gtaaagttaaaatatagcttgttgtacacttgtgttttaa |
356 |
Q |
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| T |
41561309 |
gtaaagttcaaatctagcttgttggacatttgtgtcttaa |
41561348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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