View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11028_low_7 (Length: 298)
Name: NF11028_low_7
Description: NF11028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11028_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 34872092 - 34872356
Alignment:
| Q |
19 |
gtgaagcattgatgttgactttgacatgtgataaaataggcacggagaaacgtcaaaatnnnnnnnctataggacacggtaaatagcccaca--cataat |
116 |
Q |
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| T |
34872092 |
gtgaagcattgatgttgactttgacatgtgataaaataggcacggagaaacgtcaaaataaaaaaactgcaggacacggtaaatagcacacacacataat |
34872191 |
T |
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| Q |
117 |
tgaaaattttaggagaagaactcatgatgcatatgtagacactttgaataacctttagtcattgcagttttaccccggccagcggttcccaggtcttgaa |
216 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
34872192 |
tgaaaattttaggaaaagaactcatgatgcatatgtagacactttgaataaccttcagtcattgcagttttgctccggccagcggttcccaggtcttgaa |
34872291 |
T |
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| Q |
217 |
taaccttcagctttagatcactgcggcaaatggtcgagtgggggccatatcgatcaggatcggac |
281 |
Q |
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| T |
34872292 |
taaccttcagctttagatcactgcggcaaatggtcgagtgggggccatatcgatcaggatcggac |
34872356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 34873532 - 34873391
Alignment:
| Q |
19 |
gtgaagcattgatgttgactttgacatgtgataaaataggcacggagaaacgtcaaaatnnnnnnnctataggacacggtaaata--gcccacacataat |
116 |
Q |
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| T |
34873532 |
gtgaagcattgatgttgactttgacatgtgataaaataggcacgcagaaacgtcaaaataaaaaaactgtaggacatggtaaatagtgcacacacataat |
34873433 |
T |
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| Q |
117 |
tgaaaattttaggagaagaactcatgatgcatatgtagacac |
158 |
Q |
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| T |
34873432 |
taaaaattttaataaaagaactcgtgatgcatatgtagacac |
34873391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 34875017 - 34874981
Alignment:
| Q |
114 |
aattgaaaattttaggagaagaactcatgatgcatat |
150 |
Q |
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| T |
34875017 |
aattgaaaattttaggaaaagaactcatgatgcatat |
34874981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 9918824 - 9918868
Alignment:
| Q |
31 |
tgttgactttgacatgtgataaaataggcacggagaaacgtcaaa |
75 |
Q |
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| T |
9918824 |
tgttggctttgacatgtgacaaaataggcacagagaaacatcaaa |
9918868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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