View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11028_low_8 (Length: 297)
Name: NF11028_low_8
Description: NF11028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11028_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 28 - 239
Target Start/End: Original strand, 40490548 - 40490759
Alignment:
| Q |
28 |
atataagaagggtttcttcaatccaaatccaaataatgatgtagggttgttttccgcaaatcaaaaaatgattttgatttaaaataaagtttggttgttg |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40490548 |
atataagaagggtttcttcaatccaaatccaaataatgatgcagggttgttttccgcaaatcaaaaaatgattttgatttaaaataaagtttggttgttg |
40490647 |
T |
|
| Q |
128 |
ttgtaaataataatactaaatgatagaattttattcaaaacattaacttaattttagctaagatgaatgtcgactaacactacaacaatactaccatttt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40490648 |
ttgtaaataataatactaaatgatagaattttattcaaaacattaacttaattttagctaagatgaatgtcgactaacactacaacaatactaccatttt |
40490747 |
T |
|
| Q |
228 |
gtaacaggtgaa |
239 |
Q |
| |
|
|||||||||||| |
|
|
| T |
40490748 |
gtaacaggtgaa |
40490759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 40490831 - 40490875
Alignment:
| Q |
237 |
gaaaaagtgttaggtctagtaagcaacaataggcaacagaaaatt |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40490831 |
gaaaaagtgttaggtctagtaagcaacaataggcaacagaaaatt |
40490875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University