View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11028_low_9 (Length: 251)

Name: NF11028_low_9
Description: NF11028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11028_low_9
NF11028_low_9
[»] chr7 (23 HSPs)
chr7 (18-234)||(22063158-22063374)
chr7 (18-234)||(22069627-22069843)
chr7 (26-234)||(22080372-22080580)
chr7 (18-237)||(22088106-22088325)
chr7 (26-139)||(20351712-20351825)
chr7 (18-139)||(20133649-20133770)
chr7 (26-129)||(661028-661131)
chr7 (179-216)||(661187-661224)
chr7 (168-217)||(20338457-20338506)
chr7 (168-216)||(20126626-20126674)
chr7 (168-207)||(20374991-20375030)
chr7 (86-139)||(20360777-20360830)
chr7 (26-139)||(20374843-20374956)
chr7 (168-217)||(22520776-22520825)
chr7 (172-216)||(6865292-6865336)
chr7 (91-135)||(12820321-12820365)
chr7 (90-130)||(13417350-13417390)
chr7 (91-135)||(19326396-19326440)
chr7 (168-216)||(19357429-19357477)
chr7 (91-135)||(19721618-19721662)
chr7 (172-212)||(20351633-20351673)
chr7 (89-129)||(22039823-22039863)
chr7 (95-143)||(26236425-26236473)
[»] chr6 (3 HSPs)
chr6 (90-135)||(6935640-6935685)
chr6 (90-131)||(6954953-6954994)
chr6 (90-135)||(24254845-24254890)
[»] chr4 (1 HSPs)
chr4 (92-129)||(10460204-10460241)
[»] chr5 (1 HSPs)
chr5 (168-204)||(29641902-29641938)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 22063374 - 22063158
Alignment:
Q  18 aatcttggatatttctccaaacattaacgcccaaacttaaaactgttacatttgttgtgtttggagtgaaatacaccaccttataagtttctgttgaatt 117  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  22063374 aatcttggatatttctccaaacattaacgcccaaactaaaaactcttacatttgttgtctttcgagtgaaatacaccaccttataagtttctgttgaatt 22063275  T
Q  118 atcataaccaaacgtgaaattaaaaggggaacctaggccatcatcacaatctaatttttctgatattgtccttgtggctgggttccaaaaacgaagccat 217  Q
    |||||||||||||||| ||||| ||||| |||||||||||||||||| ||  ||||||||||||||| |||||||||||||||||||||||||||||||     
T  22063274 atcataaccaaacgtgtaattacaagggaaacctaggccatcatcaccatgaaatttttctgatattatccttgtggctgggttccaaaaacgaagccaa 22063175  T
Q  218 ttctctctatatccccc 234  Q
    ||||||||||| |||||    
T  22063174 ttctctctatacccccc 22063158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 22069843 - 22069627
Alignment:
Q  18 aatcttggatatttctccaaacattaacgcccaaacttaaaactgttacatttgttgtgtttggagtgaaatacaccaccttataagtttctgttgaatt 117  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  22069843 aatcttggatatttctccaaacattaacgcccaaactaaaaactcttacatttgttgtctttcgagtgaaatacaccaccttataagtttctgttgaatt 22069744  T
Q  118 atcataaccaaacgtgaaattaaaaggggaacctaggccatcatcacaatctaatttttctgatattgtccttgtggctgggttccaaaaacgaagccat 217  Q
    |||||||||||||||| ||||| ||||| |||||||||||||||||| ||  ||||||||||||||| |||||||||||||||||||||||||||||||     
T  22069743 atcataaccaaacgtgtaattacaagggaaacctaggccatcatcaccatgaaatttttctgatattatccttgtggctgggttccaaaaacgaagccaa 22069644  T
Q  218 ttctctctatatccccc 234  Q
    ||||||||||| |||||    
T  22069643 ttctctctatacccccc 22069627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 26 - 234
Target Start/End: Complemental strand, 22080580 - 22080372
Alignment:
Q  26 atatttctccaaacattaacgcccaaacttaaaactgttacatttgttgtgtttggagtgaaatacaccaccttataagtttctgttgaattatcataac 125  Q
    |||| ||||||||||||   ||| ||||| |||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22080580 atatctctccaaacattgttgcctaaactgaaaactcttacgtttgttgtttttggagtgaaatacaccaccttataagtttctgttgaattatcataac 22080481  T
Q  126 caaacgtgaaattaaaaggggaacctaggccatcatcacaatctaatttttctgatattgtccttgtggctgggttccaaaaacgaagccatttctctct 225  Q
    |||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22080480 caaacgtgaagttaaaagggaaacctaggccatcatcaccatctaatttttctgatattgtccttgtggctgggttccaaaaacgaagccaattctctct 22080381  T
Q  226 atatccccc 234  Q
    ||| |||||    
T  22080380 atacccccc 22080372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 22088325 - 22088106
Alignment:
Q  18 aatcttggatatttctccaaacattaacgcccaaacttaaaactgttacatttgttgtgtttggagtgaaatacaccaccttataagtttctgttgaatt 117  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  22088325 aatcttggatatttctccaaacattaacgcccaaactaaaaactcttacatttgttgtctctggagtgaaatacaccaccttataagtttctgttgaatt 22088226  T
Q  118 atcataaccaaacgtgaaattaaaaggggaacctaggccatcatcacaatctaatttttctgatattgtccttgtggctgggttccaaaaacgaagccat 217  Q
    ||||||||||||| ||||||   ||||| || |||||||||||||  ||||||||||||||||||||||||||||||| |||||||||| |||||  |||    
T  22088225 atcataaccaaacttgaaatgcgaagggaaatctaggccatcatccaaatctaatttttctgatattgtccttgtggccgggttccaaacacgaattcat 22088126  T
Q  218 ttctctctatatcccccttc 237  Q
    ||||||||||| || |||||    
T  22088125 ttctctctataccctccttc 22088106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 20351825 - 20351712
Alignment:
Q  26 atatttctccaaacattaacgcccaaacttaaaactgttacatttgttgtgtttggagtgaaatacaccaccttataagtttctgttgaattatcataac 125  Q
    |||||||||||||||||| ||||||||||||||||    |||||  |||| ||||||   |||||| ||||||||||||| || ||||||||| | ||||    
T  20351825 atatttctccaaacattatcgcccaaacttaaaacatgcacattatttgtatttggaactaaatacgccaccttataagtgtcggttgaattaacgtaac 20351726  T
Q  126 caaacgtgaaatta 139  Q
    ||||||| ||||||    
T  20351725 caaacgtcaaatta 20351712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 20133649 - 20133770
Alignment:
Q  18 aatcttggatatttctccaaacattaacgcccaaacttaaaactgttacatttgttgtgtttggagtgaaatacaccaccttataagtttctgttgaatt 117  Q
    ||||||| ||| ||||||||| |||| |||| ||||| |||||  ||||||||||||| ||||||   |||||||| ||||| ||||| || ||||||||    
T  20133649 aatcttgaatagttctccaaatattatcgccaaaactgaaaacacttacatttgttgtatttggaactaaatacacgaccttgtaagtgtcggttgaatt 20133748  T
Q  118 atcataaccaaacgtgaaatta 139  Q
    | |||| |||||| | ||||||    
T  20133749 aacatagccaaacttcaaatta 20133770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 661028 - 661131
Alignment:
Q  26 atatttctccaaacattaacgcccaaacttaaaactgttacatttgttgtgtttggagtgaaatacaccaccttataagtttctgttgaattatcataac 125  Q
    |||||||||||||||||| |||| ||| | |||| | |||| |||||||| |  |||  ||| ||||||||||||||| | || |||||| |||||||||    
T  661028 atatttctccaaacattatcgcctaaattgaaaattcttacgtttgttgtctccggaaggaagtacaccaccttataaatgtcggttgaactatcataac 661127  T
Q  126 caaa 129  Q
    ||||    
T  661128 caaa 661131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 661187 - 661224
Alignment:
Q  179 gatattgtccttgtggctgggttccaaaaacgaagcca 216  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  661187 gatattgtccttgtggccgggttccaaaaacgaagcca 661224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 20338506 - 20338457
Alignment:
Q  168 ctaatttttctgatattgtccttgtggctgggttccaaaaacgaagccat 217  Q
    |||||||| | |||||| |||||||||| |||||||||||||||||||||    
T  20338506 ctaattttgcagatattttccttgtggcagggttccaaaaacgaagccat 20338457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 20126626 - 20126674
Alignment:
Q  168 ctaatttttctgatattgtccttgtggctgggttccaaaaacgaagcca 216  Q
    |||||||||| ||||||| || ||||||||| |||||||||||||||||    
T  20126626 ctaatttttcagatattgcccatgtggctggattccaaaaacgaagcca 20126674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 20374991 - 20375030
Alignment:
Q  168 ctaatttttctgatattgtccttgtggctgggttccaaaa 207  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  20374991 ctaatttttcagatattgtcctcgtggctgggttccaaaa 20375030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 20360830 - 20360777
Alignment:
Q  86 aaatacaccaccttataagtttctgttgaattatcataaccaaacgtgaaatta 139  Q
    |||||||||||||||||||| |  ||||||||| || |||||||||| ||||||    
T  20360830 aaatacaccaccttataagtgttggttgaattaacaaaaccaaacgtcaaatta 20360777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 20374843 - 20374956
Alignment:
Q  26 atatttctccaaacattaacgcccaaacttaaaactgttacatttgttgtgtttggagtgaaatacaccaccttataagtttctgttgaattatcataac 125  Q
    ||||||| |||||||||| |||| | ||| |||||   ||||||  |||| ||||||   |||||| ||||||||||||| || ||||| ||| ||||||    
T  20374843 atatttcgccaaacattatcgccaatactaaaaacacatacattatttgtatttggaactaaatacgccaccttataagtgtcggttgagttaacataac 20374942  T
Q  126 caaacgtgaaatta 139  Q
     |||||| ||||||    
T  20374943 aaaacgtcaaatta 20374956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 22520776 - 22520825
Alignment:
Q  168 ctaatttttctgatattgtccttgtggctgggttccaaaaacgaagccat 217  Q
    |||||||||| ||| |||||||||||| ||||||||||||  ||||||||    
T  22520776 ctaatttttcagatcttgtccttgtggatgggttccaaaactgaagccat 22520825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 6865292 - 6865336
Alignment:
Q  172 tttttctgatattgtccttgtggctgggttccaaaaacgaagcca 216  Q
    |||||| |||| | ||||| |||||||||||||||||||||||||    
T  6865292 tttttccgataatttccttatggctgggttccaaaaacgaagcca 6865336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 12820321 - 12820365
Alignment:
Q  91 caccaccttataagtttctgttgaattatcataaccaaacgtgaa 135  Q
    ||||||||| ||||| || |||||||||||||||||||| |||||    
T  12820321 caccaccttgtaagtgtcagttgaattatcataaccaaatgtgaa 12820365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 13417350 - 13417390
Alignment:
Q  90 acaccaccttataagtttctgttgaattatcataaccaaac 130  Q
    |||||||||| ||||| || |||||||||||||||||||||    
T  13417350 acaccaccttgtaagtgtccgttgaattatcataaccaaac 13417390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 19326396 - 19326440
Alignment:
Q  91 caccaccttataagtttctgttgaattatcataaccaaacgtgaa 135  Q
    |||||||||||||||| | |||||||||||||| ||||| |||||    
T  19326396 caccaccttataagttccagttgaattatcatacccaaatgtgaa 19326440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 19357477 - 19357429
Alignment:
Q  168 ctaatttttctgatattgtccttgtggctgggttccaaaaacgaagcca 216  Q
    ||||||| || |||| |||| |||| |||||||||||||||||||||||    
T  19357477 ctaatttctcagataatgtctttgtagctgggttccaaaaacgaagcca 19357429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 19721662 - 19721618
Alignment:
Q  91 caccaccttataagtttctgttgaattatcataaccaaacgtgaa 135  Q
    |||||||||||||||||  |||||| ||||||||||||| |||||    
T  19721662 caccaccttataagttttagttgaaatatcataaccaaatgtgaa 19721618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 20351673 - 20351633
Alignment:
Q  172 tttttctgatattgtccttgtggctgggttccaaaaacgaa 212  Q
    |||||| |||||||||||||||||| |||||||||| ||||    
T  20351673 tttttcagatattgtccttgtggcttggttccaaaagcgaa 20351633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 22039863 - 22039823
Alignment:
Q  89 tacaccaccttataagtttctgttgaattatcataaccaaa 129  Q
    ||||| ||||||||||| ||||||||||||||||| |||||    
T  22039863 tacactaccttataagtatctgttgaattatcatatccaaa 22039823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 26236473 - 26236425
Alignment:
Q  95 accttataagtttctgttgaattatcataaccaaacgtgaaattaaaag 143  Q
    ||||| ||||||| |||||||| |||||||||||||| ||| |||||||    
T  26236473 accttgtaagtttttgttgaatcatcataaccaaacgagaacttaaaag 26236425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 6935640 - 6935685
Alignment:
Q  90 acaccaccttataagtttctgttgaattatcataaccaaacgtgaa 135  Q
    |||||| ||| ||||| ||||||||||||||||||||||| |||||    
T  6935640 acaccaacttgtaagtgtctgttgaattatcataaccaaaagtgaa 6935685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 6954953 - 6954994
Alignment:
Q  90 acaccaccttataagtttctgttgaattatcataaccaaacg 131  Q
    |||||| ||| ||||| |||||||||||||||||||||||||    
T  6954953 acaccatcttgtaagtgtctgttgaattatcataaccaaacg 6954994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 24254845 - 24254890
Alignment:
Q  90 acaccaccttataagtttctgttgaattatcataaccaaacgtgaa 135  Q
    ||||||||||||||||| | |||||||||||||| ||||| |||||    
T  24254845 acaccaccttataagttccagttgaattatcatacccaaatgtgaa 24254890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 10460241 - 10460204
Alignment:
Q  92 accaccttataagtttctgttgaattatcataaccaaa 129  Q
    ||||||||||||||||| || |||||||||||||||||    
T  10460241 accaccttataagtttcagtcgaattatcataaccaaa 10460204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 29641938 - 29641902
Alignment:
Q  168 ctaatttttctgatattgtccttgtggctgggttcca 204  Q
    |||||||||| |||||| |||||||||||||||||||    
T  29641938 ctaatttttccgatattatccttgtggctgggttcca 29641902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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