View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11029_high_1 (Length: 572)
Name: NF11029_high_1
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11029_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 35755501 - 35755259
Alignment:
| Q |
1 |
tatcttcctccaattgatgaacatgcaaaagaatatggttggcaaaatagtcacaatgattctcagaggtggattcagagggagcactatggtggtgact |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35755501 |
tatcttcctccaattgatgaacatgcaaaacaatatggttggcaaaatagtcacaatgattctcagaggtggattcagagggagcactatggtggtgact |
35755402 |
T |
|
| Q |
101 |
tgcataacaagtaccaacaaggaagaactggtgggagtgggaattggggaacatgggatggatatagcagaaggagagaaaacaacatgtcatggtctaa |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35755401 |
tgcataacaagtaccaacaaggaagaaatggtgggagtgggaattggggaacatgggatggatatagcagaaggagagaaaacaacatgtcatggtctaa |
35755302 |
T |
|
| Q |
201 |
gagccctgaaaatcattatggcaataatgagtatcagatgaat |
243 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35755301 |
gagccctgaaaatcattatggcaataatgagtatcagatgaat |
35755259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 292 - 564
Target Start/End: Complemental strand, 35755210 - 35754924
Alignment:
| Q |
292 |
tggacaaggtaaatgtagatcaaatgctttgtgctgcaagcaagcaagcaaagactctataaagctgctgaaaggcctgttttgtgaaagtagttgagga |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35755210 |
tggacaaggtaaatgtagatcaaatgctttgtgctgcaagcaagcaagcaaagactctataaagctgctgaaaggcctgttttgtgaaagtagttgagga |
35755111 |
T |
|
| Q |
392 |
tataagttttgttaacttggttaga--------------attacatcatataagaagaattatgtatttttcatttttgttacagtcatcaagatgactt |
477 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35755110 |
tataagttttgttaacttggttggtgttatatatgtgatattacatcatataagaagaattatgtatttttcagttttgttacagtcatcaagatgactt |
35755011 |
T |
|
| Q |
478 |
tatggttcatggtgtttgtaatttaagaattatacctacagtaatgaaatgagaggtataattcttgtaactttgatgtcctttgct |
564 |
Q |
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| T |
35755010 |
tatggttcatggtgtttgtaatttaagaattatacctacagtaatgaaatgagaggtataattcttgtaactttgatgacctttgct |
35754924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 35766114 - 35765891
Alignment:
| Q |
14 |
ttgatgaacatgcaaaagaatatggttggcaaaatagtcacaatgattctcagaggtggattcagagggagcactatggtggtgacttgcataacaagta |
113 |
Q |
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||||| ||| ||||||||||||||| ||| ||||| | || ||| ||||||| ||| ||||||||||||||| || |||||| |||||||||||||||| |
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| T |
35766114 |
ttgataaacgtgcaaaagaatatggatggaaaaatgggcagaataattctcaaaggcggattcagagggagcgctttggtggcaacttgcataacaagta |
35766015 |
T |
|
| Q |
114 |
ccaacaaggaagaactggtgggagtgggaattggggaacatgggatggatatagcagaaggagagaaaacaacatgtcatggtctaagagccctgaaaat |
213 |
Q |
| |
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||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| | || |
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| T |
35766014 |
tcaa---ggaagaaatggtgggagtgggaattggggaacatgggatggatataacagaaggagag---acaacatgtcatggtctaagaaccctggatat |
35765921 |
T |
|
| Q |
214 |
cattatggcaataatgagtatcagatgaat |
243 |
Q |
| |
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||| |||||| || ||| |||||||||||| |
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| T |
35765920 |
catcatggcactagtgactatcagatgaat |
35765891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 24 - 243
Target Start/End: Complemental strand, 35799057 - 35798847
Alignment:
| Q |
24 |
tgcaaaagaatatggttggcaaaatagtcacaatgattctcagaggtggattcagagggagcactatggtggtgacttgcataacaagtaccaacaagga |
123 |
Q |
| |
|
|||||||||| |||| ||||||||| |||| |||||||||||| | |||| ||||||||||| |||||||||||||| ||||||||||| ||| ||| |
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| T |
35799057 |
tgcaaaagaacatggatggcaaaatggtcagaatgattctcagggatggaatcagagggagcgatatggtggtgactttcataacaagtatcaa---gga |
35798961 |
T |
|
| Q |
124 |
agaactggtgggagtgggaattggggaacatgggatggatatagcagaaggagagaaaacaacatgtcatggtctaagagccctgaaaatcattatggca |
223 |
Q |
| |
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|||| | ||||| ||||||||||||||||||||||||| ||||| || ||||||||||||||| |||||||||| ||||| | ||||| |||||| |
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| T |
35798960 |
agaaat------agtggaaattggggaacatgggatggatataacagaaagaaagaaaacaacatgtcttggtctaagaaccctggatatcatcatggca |
35798867 |
T |
|
| Q |
224 |
ataatgagtatcagatgaat |
243 |
Q |
| |
|
||||||||||||||||||| |
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| T |
35798866 |
ctaatgagtatcagatgaat |
35798847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 35785614 - 35785423
Alignment:
| Q |
14 |
ttgatgaacatgcaaaagaatatggttggcaaaatagtcacaatgattctcagaggtggattcagagggagcactatggtggtgacttgcataacaagta |
113 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||| | |
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| T |
35785614 |
ttgatgaacatgcaaaagaatatgggtggaaaaatagtcagaatgattctcagaggtggattcagagggagaactatggtggcaacttgcataacaaat- |
35785516 |
T |
|
| Q |
114 |
ccaacaaggaagaactggtgggagtgggaattggggaacatgggatggatatagcagaaggagagaaaacaacatgtcatggtctaagagccctg |
208 |
Q |
| |
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| |||||||||| |||| ||| | | ||||||| |||||||||||| |||| ||||| |||||||||||| ||||| |||||| || ||||| |
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| T |
35785515 |
--atcaaggaagaaatggttggaatagtaattgggcaacatgggatgggtataacagaaagagagaaaacaagatgtctcggtctatgaaccctg |
35785423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 24 - 243
Target Start/End: Complemental strand, 35789429 - 35789219
Alignment:
| Q |
24 |
tgcaaaagaatatggttggcaaaatagtcacaatgattctcagaggtggattcagagggagcactatggtggtgacttgcataacaagtaccaacaagga |
123 |
Q |
| |
|
||||||||||||||| ||| ||||| |||| ||||||||||| | |||| |||||||||||| |||||||||||||| ||||||||||| ||| ||| |
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| T |
35789429 |
tgcaaaagaatatggatggaaaaatggtcagaatgattctcaaggatggaatcagagggagcaatatggtggtgactttcataacaagtatcaa---gga |
35789333 |
T |
|
| Q |
124 |
agaactggtgggagtgggaattggggaacatgggatggatatagcagaaggagagaaaacaacatgtcatggtctaagagccctgaaaatcattatggca |
223 |
Q |
| |
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|||| | ||||| |||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||| || ||||| | || || |||| | |
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| T |
35789332 |
agaaat------agtggaaattgggggacatgggatggatataacagaaggagagaaaacaacatatcatggtctacgaaccctggatatgatcatggaa |
35789239 |
T |
|
| Q |
224 |
ataatgagtatcagatgaat |
243 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
35789238 |
ctaatgagtatcagatgaat |
35789219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 35760630 - 35760411
Alignment:
| Q |
18 |
tgaacatgcaaaagaatatggttggcaaaatagtcacaatgattctcagaggtggattcagagggagcactatggtggtgacttgcataacaagtaccaa |
117 |
Q |
| |
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||||||| |||||||||||||||||| |||| | || ||||||| ||| | |||| ||||| |||||| ||||||| ||||||||||||||||| | |
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| T |
35760630 |
tgaacattcaaaagaatatggttggcgaaatggccaaaatgattatcatggatggaatcagacggagcaatatggtgctgacttgcataacaagt---at |
35760534 |
T |
|
| Q |
118 |
caaggaagaactggtgggagtgggaattggggaacatgggatggatatagcagaaggagagaaaacaacatgtcatggtctaagagccctgaaaatcatt |
217 |
Q |
| |
|
|||||||||| ||| ||| ||| ||||||||| ||||||||||||||| ||||| ||||||| |||||||| |||||||| | ||| | | || || |
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|
| T |
35760533 |
caaggaagaaatggcgggcatggaaattggggagcatgggatggatataacagaaagagagaa---aacatgtcgtggtctaataaccccggacattatc |
35760437 |
T |
|
| Q |
218 |
atggcaataatgagtatcagatgaat |
243 |
Q |
| |
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|||| | |||||| |||||||||||| |
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|
| T |
35760436 |
atggtactaatgaatatcagatgaat |
35760411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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