View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11029_high_10 (Length: 404)
Name: NF11029_high_10
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11029_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 35915737 - 35915557
Alignment:
| Q |
1 |
ataatgacattttgtcacacttttgctcttctttgttcatagctacaaataattattgtatatctttaacaacagattgaaagtgttaattttaatttga |
100 |
Q |
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| T |
35915737 |
ataatgacattttgtcacacttttgctcttctttgttcatagctacaaataattattgtatatctttaacaacagattgaaagtgttaattttaatttga |
35915638 |
T |
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| Q |
101 |
tgaaaatgatgatggctgaggcagcaagcaagcgggggccgtcttgcgttgcctcgccgcgccgttgaagtggtggtaagt |
181 |
Q |
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| T |
35915637 |
tgaaaatgatgatggctgaggcagcaagcaagcgggggccgtcttgcgttgcctcgccgcgccgttgaagtggtggtaagt |
35915557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 233 - 389
Target Start/End: Complemental strand, 35915505 - 35915349
Alignment:
| Q |
233 |
gtatttgatgtgttctattaatggagggttttatggttggtgttgtatattctaccatacgtttgtaaccgtcagcaccaaaattttaggagcaatattt |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35915505 |
gtatttgatgtgttctattaatggagggttttatggttggtgttgtatattctaccatacgtttgtaaccgtcagcaccaaaattttaggagcaatattt |
35915406 |
T |
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| Q |
333 |
agtagtgctatctatgtatgtactatgttgtgttgtgcttgattgatgggtgcaact |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35915405 |
agtagtgctatctatgtatgtactatgttgtgttgtgcttgattgatgggtgcaact |
35915349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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