View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11029_high_11 (Length: 402)
Name: NF11029_high_11
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11029_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 103 - 387
Target Start/End: Original strand, 15072828 - 15073112
Alignment:
| Q |
103 |
ccttcaattttcttcattctagtcaagactcacaatcatgactaggaaaaaggtgaagctcgccttcattgtcaatgacgctgctcggaaaacaacctat |
202 |
Q |
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| T |
15072828 |
cctttaattttcttcattctagtcaagactaacaatcatgactaggaaaaaggtgaagctcaccttcattgtcaatgacgctgctcagaaagcaacctat |
15072927 |
T |
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| Q |
203 |
aagaaaagaaagaataatttattgaagatggtcgatgaactaagcacgctttgtggtattgaagcatgtgctatagttcaaggttctcatgaacctcaac |
302 |
Q |
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| T |
15072928 |
aaaaaaagaaagaataatttattgaagaaggtcgatgaactaagcacgctttgtggtattgaagcatgtgctatagttcaaggtcctcatgaacctcaac |
15073027 |
T |
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| Q |
303 |
ctcatatttggccatcaccatggggagttcatagggtgctctcaaaattcaggacaatgcctgaattagagaagaacaagaaaat |
387 |
Q |
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| T |
15073028 |
ctcatatttggccatcatcatggggagttcatagggtgctctcaaaattcaggactatgcctgaattagagaagaacaagaaaat |
15073112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 306 - 388
Target Start/End: Original strand, 15075828 - 15075910
Alignment:
| Q |
306 |
atatttggccatcaccatggggagttcatagggtgctctcaaaattcaggacaatgcctgaattagagaagaacaagaaaatt |
388 |
Q |
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| T |
15075828 |
atatttggccatcaccatgaggagttcatagggtgctctcaaaattcaggactatgcatgaatcgaagaagaccaagaaaatt |
15075910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 139 - 367
Target Start/End: Original strand, 13308159 - 13308387
Alignment:
| Q |
139 |
catgactaggaaaaaggtgaagctcgccttcattgtcaatgacgctgctcggaaaacaacctataagaaaagaaagaataatttattgaagatggtcgat |
238 |
Q |
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| T |
13308159 |
catgactagaagaaaggtgaaacttgccttcattgtcaatgacgctgcaagaaaagtaacatacaagaaaaggatgaagggtttattgaagaagattgac |
13308258 |
T |
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| Q |
239 |
gaactaagcacgctttgtggtattgaagcatgtgctatagttcaaggttctcatgaacctcaacctcatatttggccatcaccatggggagttcataggg |
338 |
Q |
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| T |
13308259 |
gaactaagcacgctttgtggaattgaagcttgtgctatagtttacggtccttatgaaccacaacctgagatttggccatccccttggggagtccaaaatg |
13308358 |
T |
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| Q |
339 |
tgctctcaaaattcaggacaatgcctgaa |
367 |
Q |
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| T |
13308359 |
tgctctcaaaattcagtatgatgcctgaa |
13308387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 387
Target Start/End: Original strand, 18949791 - 18949940
Alignment:
| Q |
236 |
gatgaactaagcacgctttgtggtattgaagcatgtgctatagttcaaggttctcatgaacctcaacctcatatttggccatcaccatggggagttcata |
335 |
Q |
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| T |
18949791 |
gatgaactaagcaccctttgtggaattgaagcttgtgctataatgtatggcccttatgaaccacaacttgagatttggccatcaccaaagggatttcaaa |
18949890 |
T |
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| Q |
336 |
gggtgctctcaaaattcaggacaatgcctgaattagagaagaacaagaaaat |
387 |
Q |
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| T |
18949891 |
--gtgctctcaaaatccaggactatacatgaattggagaagagcaagaaaat |
18949940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 387
Target Start/End: Original strand, 19004115 - 19004264
Alignment:
| Q |
236 |
gatgaactaagcacgctttgtggtattgaagcatgtgctatagttcaaggttctcatgaacctcaacctcatatttggccatcaccatggggagttcata |
335 |
Q |
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|||||||||||||| |||||||| |||||||| ||||||||| | | || || ||||||| |||| | | ||||||||||||||| ||||||||| | |
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| T |
19004115 |
gatgaactaagcaccctttgtggaattgaagcttgtgctataatgtatggcccttatgaaccacaacttgagatttggccatcaccaaagggagttcaaa |
19004214 |
T |
|
| Q |
336 |
gggtgctctcaaaattcaggacaatgcctgaattagagaagaacaagaaaat |
387 |
Q |
| |
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|||| |||||||| |||||| | | ||| || ||||||| ||||||||| |
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| T |
19004215 |
--gtgcactcaaaatccaggactacacatgagttggagaagagcaagaaaat |
19004264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 132 - 322
Target Start/End: Original strand, 10986749 - 10986939
Alignment:
| Q |
132 |
tcacaatcatgactaggaaaaaggtgaagctcgccttcattgtcaatgacgctgctcggaaaacaacctataagaaaagaaagaataatttattgaagat |
231 |
Q |
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| T |
10986749 |
tcacaaccatgactagaagaaaagttaaacttgccttcattgtgaatgatgctgcaaggaaagcaacatacaagaaaagaaagaagggtctattgaaaaa |
10986848 |
T |
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| Q |
232 |
ggtcgatgaactaagcacgctttgtggtattgaagcatgtgctatagttcaaggttctcatgaacctcaacctcatatttggccatcacca |
322 |
Q |
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||| | |||||| ||||| |||||||| || || |||||||| || ||| | || || |||| | ||||||| | ||||||||||||||| |
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| T |
10986849 |
ggttgctgaacttagcaccctttgtggaatcgatgcatgtgccatggtttatggcccttatgagcttcaacctgagatttggccatcacca |
10986939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 322
Target Start/End: Original strand, 11106491 - 11106649
Alignment:
| Q |
164 |
gccttcattgtcaatgacgctgctcggaaaacaacctataagaaaagaaagaataatttattgaagatggtcgatgaactaagcacgctttgtggtattg |
263 |
Q |
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||||||||||||||||| |||||| ||||| || | ||||||||||| ||||| | | |||| || | ||| | |||||| ||||| || |||||||||| |
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| T |
11106491 |
gccttcattgtcaatgatgctgctaggaaagcagcatataagaaaaggaagaagagtctattcaaaaaggttgttgaacttagcaccctctgtggtattg |
11106590 |
T |
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| Q |
264 |
aagcatgtgctatagttcaaggttctcatgaacctcaacctcatatttggccatcacca |
322 |
Q |
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| T |
11106591 |
aggcttgtgccatattgtatggcccttatgagcctcatcctgagatttggccatcacca |
11106649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 11099929 - 11099981
Alignment:
| Q |
164 |
gccttcattgtcaatgacgctgctcggaaaacaacctataagaaaagaaagaa |
216 |
Q |
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||||||||||||||||| |||||| ||||| |||| || |||||||| ||||| |
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| T |
11099929 |
gccttcattgtcaatgatgctgctaggaaagcaacatacaagaaaaggaagaa |
11099981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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