View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11029_high_14 (Length: 367)
Name: NF11029_high_14
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11029_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 4 - 357
Target Start/End: Original strand, 12673807 - 12674161
Alignment:
| Q |
4 |
ttttaacacatatttaggccatgtttcctttttatccaatctgaaattcttggcatgttatttaataggagtgttgaacacttgaacttgtaagtgacta |
103 |
Q |
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| T |
12673807 |
ttttaacatatttttagaccatgtttcctttttatccaatctgaaattcttggcatgttatttaataggagtgttgaacacttgaacttgtaagtgacta |
12673906 |
T |
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| Q |
104 |
tatactattaaaacaagttgcattactaacaaattgtagacagaaagnnnnnnnttaaattcatcactaatttactcatcattaaatttgatgattgaaa |
203 |
Q |
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| T |
12673907 |
tatactattaaaacaagttgcattactaacaaattgtagacagaaagaaaaaaattaaattcatcactaatttactcatcattaaatttgatgattgaaa |
12674006 |
T |
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| Q |
204 |
ttaaatagagatcaacttcaca-ttttttcataaatttttgtcattgatttagctttttctagtagtttgtcttgacatcaacatcaacataacacactc |
302 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12674007 |
ttaaatagagatcaacttcacatttttttcataaatttttgtcattgatttagctttttctagtagtttgtcttgacatcaacatcaacataacacactc |
12674106 |
T |
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| Q |
303 |
ttaattaggtcaaaaaaccttgaaccctaaccaccatatttgattttagtctctg |
357 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12674107 |
ttaattaggtcaaaaaaccttaaaccctaaccaccatatttgattttagtctctg |
12674161 |
T |
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