View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11029_high_22 (Length: 258)
Name: NF11029_high_22
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11029_high_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 12673592 - 12673831
Alignment:
| Q |
18 |
atcacttataaaagatcacatctcaactaatactcatagcacactccgctcacacctcgtattagatatctgaaacgtgatctcagtgaaacagtggatc |
117 |
Q |
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| T |
12673592 |
atcacttataaaaggtcacatctcaactaatactcgtagcacactccgctcacacctcgtattagatatctgaaacgtgatctcactgaaacagtggacc |
12673691 |
T |
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| Q |
118 |
taccttatcataggtggccaatggatcttaaatatgatcagatgttatcttaaaaattaggtttttaccaaacttaacctttaaaaaaccagcttttatg |
217 |
Q |
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| T |
12673692 |
taccttatcataggtggccaatggatcttaaatataatcagatattatcttaaaaattaggtttataccaaacttaacctttaaaaaaccagcttttatg |
12673791 |
T |
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| Q |
218 |
gggatgaatgtccttattttaacatatttttagaccatgtt |
258 |
Q |
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| T |
12673792 |
gtgatgaatgtcctt-ttttaacatatttttagaccatgtt |
12673831 |
T |
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