View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11029_high_25 (Length: 249)

Name: NF11029_high_25

Description: NF11029

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11029_high_25

[»] chr8 (1 HSPs)

[»] chr7 (1 HSPs)

Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 184; E-Value: 1e-99

Query Start/End: Original strand, 8 - 199

Target Start/End: Original strand, 43884893 - 43885084

Alignment:

Q	8	ttaacctttttagtattgacattgacactataagtagttgaggaggggtaattggtaaatggtgatatggaaaacctgttcttagttgatgttgtcctga	107	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43884893	ttaacctttttagtattgacattgacactataagtagttgaggaggggtaattggtaaatggtgatatggaaaacctgttcttagttgatgttgtcctga	43884992	T

Q	108	tggacttatcaaatgctaataaaagtcttagatgatatagtggtttagttggtttgtgtaatggctattagctaaattcattagcggattat	199	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43884993	tggacttatcaaatgctaataaaagtcttagatgatatagtggtttagttggtttgtgtaatgcctgttagctaaattcattagcggattat	43885084	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 49; E-Value: 4e-19

Query Start/End: Original strand, 2 - 97

Target Start/End: Original strand, 46770523 - 46770621

Alignment:

Q	2	tggaaattaacctttttagtattgacattgacactata---agtagttgaggaggggtaattggtaaatggtgatatggaaaacctgttcttagttgat	97	Q
		\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	46770523	tggaaatcaacatttttagtatagacattggcattgtactaagtagttgaggaggggtaattggtaaatgatgctatggaaaacctattcttagttgat	46770621	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]