View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11029_high_29 (Length: 238)

Name: NF11029_high_29
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11029_high_29
NF11029_high_29
[»] chr1 (3 HSPs)
chr1 (16-238)||(48887798-48888020)
chr1 (20-75)||(49731212-49731267)
chr1 (16-52)||(33148903-33148939)
[»] chr6 (1 HSPs)
chr6 (16-75)||(12677824-12677883)
[»] chr2 (1 HSPs)
chr2 (16-75)||(5525335-5525394)
[»] chr8 (1 HSPs)
chr8 (20-73)||(23797545-23797598)
[»] chr5 (1 HSPs)
chr5 (16-73)||(1447606-1447663)
[»] chr7 (3 HSPs)
chr7 (16-75)||(26241655-26241714)
chr7 (16-64)||(33194726-33194774)
chr7 (16-44)||(42061230-42061258)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 48887798 - 48888020
Alignment:
Q  16 taagcaactaaaacaagtaagtttttaatgaaaagtaatgcaatcattatttggtcaaatagattgaaatgggttttaacatggtaacttcatcataagt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48887798 taagcaactaaaacaagtaagtttttaatgaaaagtaatgcaatcattatttggtcaaatagattgaaatgggttttaacatggtaacttcatcataagt 48887897  T
Q  116 ttataagtcgtagtattatcaattctttacatcttggaataggatctagttctagcttgaaataagtattttgggttgagtaggtttctatttccttatt 215  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48887898 ttataagtcgtagtattatcaattctttacatcttggaatagtatctagttctagcttgaaataagtattttgggttgagtaggtttctatttccttatt 48887997  T
Q  216 caggttgtcatagaagacattct 238  Q
    |||||||||||||||||||||||    
T  48887998 caggttgtcatagaagacattct 48888020  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 49731267 - 49731212
Alignment:
Q  20 caactaaaacaagtaagtttttaatgaaaagtaatgcaatcattatttggtcaaat 75  Q
    ||||||||||||||||||||||||| ||||||| |  ||| |||||||||||||||    
T  49731267 caactaaaacaagtaagtttttaataaaaagtagtataattattatttggtcaaat 49731212  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 33148903 - 33148939
Alignment:
Q  16 taagcaactaaaacaagtaagtttttaatgaaaagta 52  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  33148903 taagcaactaaaataagtaagtttttaataaaaagta 33148939  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 12677824 - 12677883
Alignment:
Q  16 taagcaactaaaacaagtaagtttttaatgaaaagtaatgcaatcattatttggtcaaat 75  Q
    ||||||||||||||||||||||||||||| ||||||| || |||||||| ||||||||||    
T  12677824 taagcaactaaaacaagtaagtttttaataaaaagtagtgtaatcattacttggtcaaat 12677883  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 5525394 - 5525335
Alignment:
Q  16 taagcaactaaaacaagtaagtttttaatgaaaagtaatgcaatcattatttggtcaaat 75  Q
    ||||||||||||| ||||||||||||||| ||||||| |  |||||||||||||||||||    
T  5525394 taagcaactaaaataagtaagtttttaataaaaagtagtataatcattatttggtcaaat 5525335  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 23797598 - 23797545
Alignment:
Q  20 caactaaaacaagtaagtttttaatgaaaagtaatgcaatcattatttggtcaa 73  Q
    |||||||||||||||| ||||||||||||||| ||| ||| |||| ||||||||    
T  23797598 caactaaaacaagtaaatttttaatgaaaagtgatgaaattattacttggtcaa 23797545  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 1447663 - 1447606
Alignment:
Q  16 taagcaactaaaacaagtaagtttttaatgaaaagtaatgcaatcattatttggtcaa 73  Q
    |||||||| |||| ||||||||||||||||||||||| || ||| |||| ||||||||    
T  1447663 taagcaacaaaaataagtaagtttttaatgaaaagtagtgtaattattacttggtcaa 1447606  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 26241714 - 26241655
Alignment:
Q  16 taagcaactaaaacaagtaagtttttaatgaaaagtaatgcaatcattatttggtcaaat 75  Q
    |||||||||||||||||||| |||||||| ||||||| |  ||| |||||||| ||||||    
T  26241714 taagcaactaaaacaagtaactttttaataaaaagtagtataattattatttgatcaaat 26241655  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 33194726 - 33194774
Alignment:
Q  16 taagcaactaaaacaagtaagtttttaatgaaaagtaatgcaatcatta 64  Q
    ||||||||||||| |||||| |||||||| ||||||| || ||||||||    
T  33194726 taagcaactaaaataagtaaatttttaataaaaagtagtgtaatcatta 33194774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 42061230 - 42061258
Alignment:
Q  16 taagcaactaaaacaagtaagtttttaat 44  Q
    |||||||||||||||||||||||||||||    
T  42061230 taagcaactaaaacaagtaagtttttaat 42061258  T

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