View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11029_high_36 (Length: 217)
Name: NF11029_high_36
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11029_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 48888425 - 48888504
Alignment:
| Q |
131 |
taaggaggaacatgttatgaatttatttgtgctattttagatgttcagtgctgctatttacattctagtttaaattaagt |
210 |
Q |
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| T |
48888425 |
taaggaggaacatgttatgaatttatttgtgctattttagatgttcagtactgctatttacattctagtttaaattaagt |
48888504 |
T |
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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 48888296 - 48888367
Alignment:
| Q |
1 |
cagaattgtatataagattgcaatgtgaaatcgattctgtactggtttaacattcttgagagcttaatcacc |
72 |
Q |
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| T |
48888296 |
cagaattgtatataagattgcaatgtgaaatcgattctgtactggtttaacattgttgagagcttaatcacc |
48888367 |
T |
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