View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11029_high_9 (Length: 411)
Name: NF11029_high_9
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11029_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 6371112 - 6370738
Alignment:
| Q |
17 |
tcttaattcaaacttgattagtaataaacaataaagtacatacacaggacatgtccacaccagtnnnnnnnnnnnnnnnntgaattgattcaatgtattc |
116 |
Q |
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| T |
6371112 |
tcttaattcaaaattgattagtaataaacaataaagcacatacacag-acatgtccacaccagtaaaaaaaattgtaaa-tgaattgattcaatgtattc |
6371015 |
T |
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| Q |
117 |
caagagtaaaataaattagttaattgattgagaatttgatgaaagtagagaaatgaatttaatgataacaattaattaaaaattaccgttgccgaagatg |
216 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6371014 |
caagagttaaataaactagttaattgattgagaatttgatgaaagtagagaaatgaatttaatgataacaattaattaaaaattaccgttgccgaagatg |
6370915 |
T |
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| Q |
217 |
gcggtgcgagggctaccacgaggagaaggagtaccatcgcgatcagaggctgcggaggaagacggtgtagttacggcggcggatttagggttccgagaat |
316 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6370914 |
gcggtgcgagggctaccaagaggagaaggagtaccatcgcgatcagaggctgcggaggaagacggtgtagttacggcggcggatttagggttccgagaat |
6370815 |
T |
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| Q |
317 |
cattgtaacttttattaacagcatgataaagttcaagagcaggtaaagtatcaacaagacgacgatcagtttcaact |
393 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6370814 |
cattataacttttattaacagcatgataaagttcaagagcaggtaaagtatcaacaagacgacgatcagtttcaact |
6370738 |
T |
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