View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11029_low_12 (Length: 384)
Name: NF11029_low_12
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11029_low_12 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 8 - 384
Target Start/End: Original strand, 53117843 - 53118219
Alignment:
| Q |
8 |
gagcacagacttaatttagtaagctaatctttacataataccttgagttgttcggcaaatctctgacattggactactggatcattcaattcagtatatg |
107 |
Q |
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| T |
53117843 |
gagcacagacttaatttagtacgctaatctttacatcataccttgagttgttcggcaaatctctgacgttgcactactggatcattcaattcagtatatg |
53117942 |
T |
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| Q |
108 |
cattgcaaagctgaaaattaacagaaaaacagtgacaa-gaataaaaaagttgttaacttcatgcttattgacgaacaattaaaaacgcttcgtcagacc |
206 |
Q |
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| T |
53117943 |
cattgcaaagctgaaaattaacagaaaaacagtgacaaagaataaaaaagttgttaacttcatgcttattgacgaacaattaaaaacgcttcgtcagacc |
53118042 |
T |
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| Q |
207 |
tggttttgatctgtgccactttgccaaaggactcctgatctcgggatgatttatgatgaatgtaggactgacacgtttttcttccaaaatgtagcttaca |
306 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53118043 |
tggttttgatctgtgccactttgccaaaggactcatgatctcgggatgatttatgatgaatgtaggactgacacgtgtttcttccaaaatgtagcttaca |
53118142 |
T |
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| Q |
307 |
agctgcaatatggaccaaacttagaatcataaccacaacttattaagcaaatgactgatattgtgagtgaagaatgtt |
384 |
Q |
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| T |
53118143 |
agctgcaatat-gaccaaacttagaatcataaccacaacttattaagcaaatgactgatattgtgagtgaagaatgtt |
53118219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 163 - 383
Target Start/End: Original strand, 53108673 - 53108893
Alignment:
| Q |
163 |
acttcatgcttattgacgaacaattaaaaacgcttcgtcagacctggttttgatctgtgccactttgccaaaggactcctgatctcgggatgatttatga |
262 |
Q |
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| T |
53108673 |
acttcatgcttattgacgaacaattcaaaacgttcggtcaggcctggttttaatctgtgccactttgccaaaggactcatgatctcgggatgatttatga |
53108772 |
T |
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| Q |
263 |
tgaatgtaggactgacacgtttttcttccaaaatgtagcttacaagctgcaatatggaccaaacttagaatca-taaccacaacttattaagcaaatgac |
361 |
Q |
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| T |
53108773 |
tgaatgtaggattgacacatgtttcttccaaaaagtgtccgacaagctgcaatgt-gaccaaacttagaatcattaaccacagcttattaatcaaatgac |
53108871 |
T |
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| Q |
362 |
tgatattgtgagtgaagaatgt |
383 |
Q |
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| T |
53108872 |
taatattgtgagttaagaatgt |
53108893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 53113601 - 53113744
Alignment:
| Q |
23 |
ttagtaagctaatctttacataataccttgagttgttcggcaaatctctgacattggactactggatcattcaattcagtatatgcattgcaaagctgaa |
122 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
53113601 |
ttagtaagctaatctttagatcataccttgagttgttcggcaaatctctgacgttgcactacaggatcattcaattcagtatatgcattggaaagctgaa |
53113700 |
T |
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| Q |
123 |
aattaacagaaaaacagtgacaagaataaaaaagttgttaactt |
166 |
Q |
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| T |
53113701 |
agttaacagaaaaacagtgacaagaatcaaaaagttgttaactt |
53113744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 53108484 - 53108632
Alignment:
| Q |
18 |
ttaatttagtaagctaatctttacataataccttgagttgttcggcaaatctctgacattggactactggatcattcaattcagtatatgcattgcaaag |
117 |
Q |
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||||||| ||| |||||||||||||| |||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||| | |||||||| |
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| T |
53108484 |
ttaattttgtacgctaatctttacatcataccttgagttgttcagcaaatctctgacgttgcactactggatcattcaattcagtatagccgttgcaaag |
53108583 |
T |
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| Q |
118 |
ctgaaaattaacagaaaaacagtgacaagaataaaaaagttgttaactt |
166 |
Q |
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| T |
53108584 |
ctgaaaattaacagacaaacagtgacaagaatcaaaaagttgttaactt |
53108632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 199 - 318
Target Start/End: Original strand, 53113813 - 53113932
Alignment:
| Q |
199 |
gtcagacctggttttgatctgtgccactttgccaaaggactcctgatctcgggatgatttatgatgaatgtaggactgacacgtttttcttccaaaatgt |
298 |
Q |
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||||| |||||||| | ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||| | |||||||||||| || |
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| T |
53113813 |
gtcaggcctggtttcgttctgtgccactttgccaaagggctcatgatctcgggatgatttatgatgaatgtaggattgacacatgtttcttccaaaaagt |
53113912 |
T |
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| Q |
299 |
agcttacaagctgcaatatg |
318 |
Q |
| |
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|| | ||||||| |||||| |
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| T |
53113913 |
ggcctgcaagctgaaatatg |
53113932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 53126288 - 53126436
Alignment:
| Q |
18 |
ttaatttagtaagctaatctttacataataccttgagttgttcggcaaatctctgacattggactactggatcattcaattcagtatatgcattgcaaag |
117 |
Q |
| |
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|||||||||||||||||| |||| || ||||||||||||||| |||||||||| || ||| || || |||| ||||| ||||||||||||||||||||| |
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| T |
53126288 |
ttaatttagtaagctaatatttatatcataccttgagttgttgagcaaatctctcacgttgcacaacaggattattcagttcagtatatgcattgcaaag |
53126387 |
T |
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| Q |
118 |
ctgaaaattaacagaaaaacagtgacaagaataaaaaagttgttaactt |
166 |
Q |
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||||||| ||||| |||||| ||| |||||| || ||| |||| |||| |
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| T |
53126388 |
ctgaaaagtaacaagaaaacaatgagaagaatcaataagctgttcactt |
53126436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 163 - 311
Target Start/End: Original strand, 53126475 - 53126623
Alignment:
| Q |
163 |
acttcatgcttattgacgaacaattaaaaacgcttcgtcagacctggttttgatctgtgccactttgccaaaggactcctgatctcgggatgatttatga |
262 |
Q |
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||||||||||||||||| ||||||| |||||||| ||||| ||||||||| ||||||| |||| |||||||||||| | || ||||| ||||| |||| |
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| T |
53126475 |
acttcatgcttattgacaaacaattcaaaacgctcggtcaggcctggtttttctctgtgcgacttggccaaaggactcattatttcggggtgattcatga |
53126574 |
T |
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| Q |
263 |
tgaatgtaggactgacacgtttttcttccaaaatgtagcttacaagctg |
311 |
Q |
| |
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||||||||||| |||||| |||||||||||| || || ||||||||| |
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| T |
53126575 |
tgaatgtaggattgacacacgtttcttccaaaaagtggcctacaagctg |
53126623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 181 - 295
Target Start/End: Complemental strand, 15841201 - 15841087
Alignment:
| Q |
181 |
aacaattaaaaacgcttcgtcagacctggttttgatctgtgccactttgccaaaggactcctgatctcgggatgatttatgatgaatgtaggactgacac |
280 |
Q |
| |
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||||||| |||||| | ||||| |||||||||| |||||||||||| |||||||||||| | ||||| || || |||||||||||||||||| |||||| |
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| T |
15841201 |
aacaattcaaaacgttcagtcaggcctggttttgttctgtgccacttcgccaaaggactcattatctctgggtggtttatgatgaatgtaggattgacac |
15841102 |
T |
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| Q |
281 |
gtttttcttccaaaa |
295 |
Q |
| |
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| |||| ||||||| |
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| T |
15841101 |
atgtttcctccaaaa |
15841087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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