View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11029_low_13 (Length: 375)
Name: NF11029_low_13
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11029_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 27852889 - 27853019
Alignment:
| Q |
18 |
ctttaggcctcacaattttaaataaaaaaggagtaaaagaattcaattcaattataaatatataatatgacaaattacttatagatatttgtctaattca |
117 |
Q |
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| T |
27852889 |
ctttaggcctcacaattttagataaaaaaggagtaaaagaattcaattcgattataaatatataatatgacaaattacttatagatatttgtctaattca |
27852988 |
T |
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| Q |
118 |
attaatctatatgaaagtgccgtgtcttgtc |
148 |
Q |
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| T |
27852989 |
attaatctatatgaaagtgtcgtgtcttgtc |
27853019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 216 - 365
Target Start/End: Original strand, 27853087 - 27853238
Alignment:
| Q |
216 |
catgttgggttgtccttggatcgatttataaataatcaatattttccatttatatacattaatacataaagaatatgnnnnnnnnct--ttctcagtttg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| || |
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| T |
27853087 |
catgttgggttgtccttggatcgatttataaataatcaatattttccatttatatacattaatacataaagaatatgtttttttttttcttctcagtatg |
27853186 |
T |
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| Q |
314 |
tagtgtttgcctggtgggtgtaaccttaatttgcataggtacactctctctg |
365 |
Q |
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| T |
27853187 |
tagtgttttcctggtgggtgtaaccttaatttgcataggtacactctctctg |
27853238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 4894325 - 4894279
Alignment:
| Q |
62 |
aattcaattataaatatataatatgacaaattacttatagatatttg |
108 |
Q |
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| T |
4894325 |
aatttaattataaatatataacatgacatattagttatagatatttg |
4894279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 10527306 - 10527352
Alignment:
| Q |
62 |
aattcaattataaatatataatatgacaaattacttatagatatttg |
108 |
Q |
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| T |
10527306 |
aattcagttatgaatatgtaatatgacaaattaattatagatatttg |
10527352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 31763055 - 31763145
Alignment:
| Q |
19 |
tttaggcctcacaattttaaataaaaaaggag-taaaagaattcaattcaattataaatatataatatgacaaattacttatagatatttg |
108 |
Q |
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| T |
31763055 |
tttaggcctcaaaattttggataaaaaaagacctaaaaaacttcaatttagttataaatatataatatgacaaaattattatagatgtttg |
31763145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 99
Target Start/End: Original strand, 20529027 - 20529057
Alignment:
| Q |
69 |
ttataaatatataatatgacaaattacttat |
99 |
Q |
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| T |
20529027 |
ttataaatatataatatgacaaattacttat |
20529057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 11810025 - 11809981
Alignment:
| Q |
59 |
ttcaattcaattataaatatataatatgacaaattacttatagat |
103 |
Q |
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||||||| |||||||||||||||||||||| |||| |||||||| |
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| T |
11810025 |
ttcaatttaattataaatatataatatgacttattagttatagat |
11809981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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