View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11029_low_17 (Length: 301)

Name: NF11029_low_17
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11029_low_17
NF11029_low_17
[»] chr3 (2 HSPs)
chr3 (18-284)||(12700519-12700803)
chr3 (207-284)||(47615259-47615336)
[»] chr5 (3 HSPs)
chr5 (18-284)||(19753256-19753540)
chr5 (207-284)||(18486586-18486663)
chr5 (237-265)||(25523384-25523412)
[»] chr8 (3 HSPs)
chr8 (18-140)||(23169501-23169624)
chr8 (176-284)||(23169626-23169734)
chr8 (207-284)||(10007451-10007534)
[»] chr7 (1 HSPs)
chr7 (207-284)||(7500791-7500868)
[»] chr6 (1 HSPs)
chr6 (207-284)||(7315987-7316064)
[»] chr4 (1 HSPs)
chr4 (237-265)||(8156534-8156562)
[»] chr1 (2 HSPs)
chr1 (237-265)||(36613161-36613189)
chr1 (237-265)||(39222238-39222266)


Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 12700803 - 12700519
Alignment:
Q  18 acagaaccagcaacaacaggcatagtgttaggccaaaaaactccccc-aaccgtatcaactctgcggccacagaaccacaaagcctca------------ 104  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||                
T  12700803 acagaaccagcaacaacaggcataatgttaggccaaaaaactccccccaaccatatcaactctgcggccacagaaccacaaagcctcatacctcaagcct 12700704  T
Q  105 --aacgcgccttagccacgcacaagtacacgcctatatatttaatatggaagaagctcctctcacatccatatggggttgtagacttgtagctactatcg 202  Q
      ||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  12700703 caaacacgccttagctacgcacaagaacacgcctatatatttaatatggaagaagctcctctcagatccatatggggttgtagacttgtagctactatgg 12700604  T
Q  203 agtacttgggggttttgttgggaaggtgatgggttcaagaggaagaagaagaag---ccattggaatggaaggtggtgctggtgg 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  12700603 agtacttgggggttttgttgggaaggtgatgggttcaagaggaagaagaagaagaaaccattggaatggaaggtggtgctggtgg 12700519  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 47615259 - 47615336
Alignment:
Q  207 cttgggggttttgttgggaaggtgatgggttcaagaggaagaagaagaagccattggaatggaaggtggtgctggtgg 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47615259 cttgggggttttgttgggaaggtgatgggttcaagaggaagaagaagaaaccattggaatggaaggtggtgctggtgg 47615336  T

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Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 19753540 - 19753256
Alignment:
Q  18 acagaaccagcaacaacaggcatagtgttaggccaaaaaactccccc-aaccgtatcaactctgcggccacagaaccacaaagcctca------------ 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||                
T  19753540 acagaaccagcaacaacaggcatagtgttaggccaaaaaactccccccaaccgtatcaactctgcggccacagaaccacaaagcctcatacctcaagcct 19753441  T
Q  105 --aacgcgccttagccacgcacaagtacacgcctatatatttaatatggaagaagctcctctcacatccatatggggttgtagacttgtagctactatcg 202  Q
      ||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  19753440 caaacacgccttagcgacgcacaagaacacgcctatatatttaatatggaagaagctcctctcagatccatatggggttgtagacttgtagctactatgg 19753341  T
Q  203 agtacttg-ggggttttgttgggaaggtgatgggttcaagaggaagaagaagaag---ccattggaatggaaggtggtgctggtgg 284  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||||   |||||||||||||||||||| |||||||    
T  19753340 agtacttggggggttttgttgggaaggtgat-ggttcaagaggaagaagaagaagaaaccattggaatggaaggtggtactggtgg 19753256  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 18486586 - 18486663
Alignment:
Q  207 cttgggggttttgttgggaaggtgatgggttcaagaggaagaagaagaagccattggaatggaaggtggtgctggtgg 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18486586 cttgggggttttgttgggaaggtgatgggttcaagaggaagaagaagaaaccattggaatggaaggtggtgctggtgg 18486663  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 25523412 - 25523384
Alignment:
Q  237 tcaagaggaagaagaagaagccattggaa 265  Q
    |||||||||||||||||||||||||||||    
T  25523412 tcaagaggaagaagaagaagccattggaa 25523384  T

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Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 23169501 - 23169624
Alignment:
Q  18 acagaaccagcaacaacaggcatagtgttaggccaaaaaactccc-ccaaccgtatcaactctgcggccacagaaccacaaagcctcaaacgcgccttag 116  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  23169501 acagaaccagcaacaacaggcatagtattaggccaaaaaactccctccaaccgtatcaactctgcggccacagaaccacgaagcctcaaacacgccttag 23169600  T
Q  117 ccacgcacaagtacacgcctatat 140  Q
    |||||| |||||||||||||||||    
T  23169601 ccacgctcaagtacacgcctatat 23169624  T

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Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 23169626 - 23169734
Alignment:
Q  176 ggggttgtagacttgtagctactatcgagtacttgggggttttgttgggaaggtgatgggttcaagaggaagaagaagaagccattggaatggaaggtgg 275  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23169626 ggggttgtagacttgtagctactatggagtacttgagggttttgttgggaaggtgatgggttcaagaggaagaagaagaagccattggaatggaaggtgg 23169725  T
Q  276 tgctggtgg 284  Q
    ||| |||||    
T  23169726 tgccggtgg 23169734  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 10007451 - 10007534
Alignment:
Q  207 cttgggggttttgttgggaaggtgatgggttcaagag------gaagaagaagaagccattggaatggaaggtggtgctggtgg 284  Q
    |||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||    
T  10007451 cttgggggttttgttgggaaggtgatgggttcaagaggaagaagaagaagaagaagccattggaatggaaggtggtgctggtgg 10007534  T

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Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 7500868 - 7500791
Alignment:
Q  207 cttgggggttttgttgggaaggtgatgggttcaagaggaagaagaagaagccattggaatggaaggtggtgctggtgg 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7500868 cttgggggttttgttgggaaggtgatgggttcaagaggaagaagaagaaaccattggaatggaaggtggtgctggtgg 7500791  T

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Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 7315987 - 7316064
Alignment:
Q  207 cttgggggttttgttgggaaggtgatgggttcaagaggaagaagaagaagccattggaatggaaggtggtgctggtgg 284  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7315987 cttgggggtttttttgggaaggtgatgggttcaagaggaagaagaagaagccattggaatggatggtggtgctggtgg 7316064  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 8156534 - 8156562
Alignment:
Q  237 tcaagaggaagaagaagaagccattggaa 265  Q
    |||||||||||||||||||||||||||||    
T  8156534 tcaagaggaagaagaagaagccattggaa 8156562  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 36613189 - 36613161
Alignment:
Q  237 tcaagaggaagaagaagaagccattggaa 265  Q
    |||||||||||||||||||||||||||||    
T  36613189 tcaagaggaagaagaagaagccattggaa 36613161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 39222238 - 39222266
Alignment:
Q  237 tcaagaggaagaagaagaagccattggaa 265  Q
    |||||||||||||||||||||||||||||    
T  39222238 tcaagaggaagaagaagaagccattggaa 39222266  T

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