View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11029_low_18 (Length: 298)
Name: NF11029_low_18
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11029_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 53118228 - 53118511
Alignment:
| Q |
1 |
ctatgcaaagcagatcagatgacattgtaatccaatttctgaactatttttatgttcaatatctgttaagcaactccaaaccatgccaacaaatcttttt |
100 |
Q |
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| T |
53118228 |
ctatgcaaagcagatcagatgacattgtaatccaatttctgaactatttttatgttcaatatctgttaagcaactccaaaccatgccaacaaatcttttt |
53118327 |
T |
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| Q |
101 |
gctcaattcaacaagggaaaagagattacaacatgattttgaatnnnnnnnnnnnnttgaaaataaagcatattataggccaacaaagaaacagattgta |
200 |
Q |
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| T |
53118328 |
gctcaattcaacaagggaaaagagattacaacatgattttgaataaaaacaaaaaattgaaaataaagcatattataggccaacaaagaaacagattgta |
53118427 |
T |
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| Q |
201 |
cattactttataca--acaccagagcagtggtttgagggcgagcgcatttgttgtcatacttcaagcatgcattcttcagatat |
282 |
Q |
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| T |
53118428 |
cattactttatccaacacaccagagcagtggtttgagggcgagcgcatttgttgtcatacttcaagcatgcattcttcagatat |
53118511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 157 - 282
Target Start/End: Original strand, 53126861 - 53126986
Alignment:
| Q |
157 |
ttgaaaataaagcatattataggccaacaaagaaacagattgtacattactttatacaacaccagagcagtggtttgagggcgagcgcatttgttgtcat |
256 |
Q |
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| T |
53126861 |
ttgaaaataaagcatattataggccaacaaagaaacagattgtacattactttatccaacaaccgagcagtggtttgagggggagcgcatttgatgtcat |
53126960 |
T |
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| Q |
257 |
acttcaagcatgcattcttcagatat |
282 |
Q |
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| T |
53126961 |
acttcaagcatgcattcttcagatat |
53126986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 157 - 282
Target Start/End: Original strand, 53109037 - 53109162
Alignment:
| Q |
157 |
ttgaaaataaagcatattataggccaacaaagaaacagattgtacattactttatacaacaccagagcagtggtttgagggcgagcgcatttgttgtcat |
256 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || | ||||||||||||||||| ||||||||||| |||||| |
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| T |
53109037 |
ttgaaaacaaagcatattataggccaacaaagaaacagattgtacattactttatccatcaaccgagcagtggtttgagggggagcgcatttgatgtcat |
53109136 |
T |
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| Q |
257 |
acttcaagcatgcattcttcagatat |
282 |
Q |
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| T |
53109137 |
agttcaagcatacattcttcagatat |
53109162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 161 - 282
Target Start/End: Original strand, 53114466 - 53114587
Alignment:
| Q |
161 |
aaataaagcatattataggccaacaaagaaacagattgtacattactttatacaacaccagagcagtggtttgagggcgagcgcatttgttgtcatactt |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| ||||||| | |||||||||| ||||||||| |
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| T |
53114466 |
aaataaagcatattataggccaacaaagaaacagattgtgaattactttatccaacaatcgagcagttgtttgagcgggagcgcatttaatgtcatactc |
53114565 |
T |
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| Q |
261 |
caagcatgcattcttcagatat |
282 |
Q |
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|||||||||||||||||||||| |
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| T |
53114566 |
caagcatgcattcttcagatat |
53114587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 53108903 - 53108966
Alignment:
| Q |
1 |
ctatgcaaagcagatcagatgacattgtaatccaatttctgaactatttttatgttcaatatctg |
65 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||| |||| |
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| T |
53108903 |
ctatgcaaagcagatcagatcacattttaatccaatttctgaact-tttttacgttcaatttctg |
53108966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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