View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11029_low_19 (Length: 293)
Name: NF11029_low_19
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11029_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 38867093 - 38867357
Alignment:
| Q |
18 |
gaaactgcatactagaatctgcatctcaacacactaggtgcctgtgtgaagggtccattttcgaagaacgaaaacaaaactgttgttgaataaggtgcat |
117 |
Q |
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| T |
38867093 |
gaaactgcatactagaatctgcatctcaacacactaggtgcctgtgtgaagggtccattttcgaagaacgaaaacaaaactgtcgttgaataaggtgcat |
38867192 |
T |
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| Q |
118 |
atagtgaatatgagaagttcctgcttcaatgaatgaaacagaccaaaacattatcaaatcggtacttttagtaacactcattcaatctcttttcatttga |
217 |
Q |
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| T |
38867193 |
atagtgaatatgtgaagttcctgcttcaatgaatgaaacagaccaaaacattatcaaatcggtacttttagtaacactaattcaatctcttttcatttga |
38867292 |
T |
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| Q |
218 |
caattgaataatatgtcaaatgacaattggcaaaaaagaatgcattattgagtcactcagttcat |
282 |
Q |
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| T |
38867293 |
caattgaataatatgtcaaatgacaattggcaaaaaagaatgcattattgagtcactcagttcat |
38867357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 33 - 281
Target Start/End: Complemental strand, 38805937 - 38805692
Alignment:
| Q |
33 |
aatctgcatctcaacacactaggtgcctgtgtgaagggtccattttcgaagaacgaaaacaaaactgttgttgaataaggtgcatatagtgaatatgaga |
132 |
Q |
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| T |
38805937 |
aatccgcatcacaacacactaagtgcctgtgtc----gtctatttttgaagaacgaaaacaaaactgtcgtcgaataaggtgcatgtagtgagtatgtga |
38805842 |
T |
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| Q |
133 |
agttcctgcttcaatgaatgaaacagaccaaaacattatcaaatcggtacttttagtaacactcattcaatctcttttcatttgacaattgaat-aatat |
231 |
Q |
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| T |
38805841 |
agttcctgcttcaatgaatgaaacagaccaaagcataatcaaatgggtacttttagtaacactccttcaatcccttttcatttgacaattgaataaatat |
38805742 |
T |
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| Q |
232 |
gtcaaatgacaattggcaaaaaagaatgcattattgagtcactcagttca |
281 |
Q |
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| T |
38805741 |
gtcaaatgacaattggcaaaaaagaatgcactattgagtcactcagttca |
38805692 |
T |
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