View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11029_low_2 (Length: 523)
Name: NF11029_low_2
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11029_low_2 |
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| [»] scaffold1719 (1 HSPs) |
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| [»] scaffold0717 (2 HSPs) |
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| [»] scaffold1248 (1 HSPs) |
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| [»] scaffold0952 (1 HSPs) |
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Alignment Details
Target: scaffold1719 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: scaffold1719
Description:
Target: scaffold1719; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 18 - 515
Target Start/End: Complemental strand, 660 - 148
Alignment:
| Q |
18 |
taacgatcgtattaacttttactcctaattttacttaatgtaacaacctcttacctccctcacaaatctgcaacgtgggaggactccattcaatatgagg |
117 |
Q |
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| T |
660 |
taacgatcgtattaacttttactcctaattttacttaatgtaacaacctcttacctccctcacaaatctgcaacgtgggaggactccattcaatatgagg |
561 |
T |
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| Q |
118 |
aagtgttgcattcacctattgatattaatctcacaaacttgtaacgtgggag--------------cacccaatgcatgttcaacttcagatcacatgaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
560 |
aagtgttgcattcacctattgatattaatctcacaaacttgtaacgtgggaggactcaatgcatagcacccaatgcatgttcaacttcagatcacataaa |
461 |
T |
|
| Q |
204 |
aacttggcaaagatcacataaaaacttaa-tataatacctgaatacctaatgcattgcaccgcctgagtattaaatccgaatacgatagatccttaagac |
302 |
Q |
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| T |
460 |
aacttggcaaagatcacataaaaacttaaatataatacctgaatacctaatgcattgcaccgcctgagtattaaatccgaatacgatagatccttaagac |
361 |
T |
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| Q |
303 |
acccatgatttcaaataaatttgaacattgaaggttactcatatttcaaacttctgacatattgctatgtttgagttgcgtgttctaatttacttttact |
402 |
Q |
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| T |
360 |
acccatgatttcaaataaatttgaacattgaaggttactcatatttcaaacttctgacatattgctatgtttaagttgcgtgttctaatttacttttact |
261 |
T |
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| Q |
403 |
taatgtaacaacctcaacctgatattaatgctcttaaagaagttttgcaacaagataggtaaatataagacacgcagtacaaaacatgtaagcgttcacg |
502 |
Q |
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| T |
260 |
taatgtaacaacctcaacctgatattaatgctcttaaagaagttttgcaacaagataggtaaatataagacacgcagtacaaaacatgtaagcgttcacg |
161 |
T |
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| Q |
503 |
cagcattcatctc |
515 |
Q |
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||||||||||||| |
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| T |
160 |
cagcattcatctc |
148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 150 - 373
Target Start/End: Complemental strand, 20600776 - 20600547
Alignment:
| Q |
150 |
acaaacttgtaacgtgggagcacccaatgcatgttcaacttca----------gatcacatgaaaacttggcaaagatcacataaaaacttaa-tataat |
238 |
Q |
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|||| |||| |||||||||| |||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| |||||| |
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| T |
20600776 |
acaagcttgcaacgtgggaggacccaatgcatgttcaacttcaaaaaccaacagatcacataaaaacttgt-----atcacataaaaacttaaatataat |
20600682 |
T |
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| Q |
239 |
acctgaatacctaatgcattgcaccgcctgagtattaaatccgaatacgatagatccttaagacacccatgatttcaaataaatttgaacattgaaggtt |
338 |
Q |
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| T |
20600681 |
acctgaatacctaatgcattgtaccgcctgagtattaaatccgaatacgatagatccttaagacacccatgatttcaaataaatttgaacattcaaggtt |
20600582 |
T |
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| Q |
339 |
actcatatttcaaacttctgacatattgctatgtt |
373 |
Q |
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| T |
20600581 |
actcatatttcaaacttctgacatattgctatgtt |
20600547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 372 - 515
Target Start/End: Complemental strand, 20600490 - 20600346
Alignment:
| Q |
372 |
tttgagttgcgtgttctaattt-acttttacttaatgtaacaacctcaacctgatattaatgctcttaaagaagttttgcaacaagataggtaaatataa |
470 |
Q |
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|||| ||| ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20600490 |
tttgcgttacgtgttctaatttgacttttactcaatgtaacaacctcagcctgatattaatgctcttaaagaagttttgcaacaagataggtaaatataa |
20600391 |
T |
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| Q |
471 |
gacacgcagtacaaaacatgtaagcgttcacgcagcattcatctc |
515 |
Q |
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| T |
20600390 |
gacacgcagtacaaaacatgtaagcgttcacgcagcattcatctc |
20600346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 20579771 - 20579717
Alignment:
| Q |
323 |
ttgaacattgaaggttactcatatttcaaacttctgacata-ttgctatgtttga |
376 |
Q |
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|||||||||||||||||||||||| |||||||||||||| | ||||||||||||| |
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| T |
20579771 |
ttgaacattgaaggttactcatatatcaaacttctgacagatttgctatgtttga |
20579717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0717 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: scaffold0717
Description:
Target: scaffold0717; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 619 - 528
Alignment:
| Q |
102 |
tccattcaatatgaggaagtgttgcattcacctattgatattaatctcacaaacttgtaacgtggg-agcacccaatgcatgttcaacttca |
192 |
Q |
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| T |
619 |
tccattcaatatgaggaagtgttgcattcacctattgatattaatctcacaaacttgtaacgtgggtggcacccaatgcatgttcaacttca |
528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0717; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 4494 - 4440
Alignment:
| Q |
323 |
ttgaacattgaaggttactcatatttcaaacttctgacata-ttgctatgtttga |
376 |
Q |
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|||||||||||||||||||||||| |||||||||||||| | ||||||||||||| |
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| T |
4494 |
ttgaacattgaaggttactcatatatcaaacttctgacagatttgctatgtttga |
4440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1248 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold1248
Description:
Target: scaffold1248; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 323 - 381
Target Start/End: Complemental strand, 2272 - 2213
Alignment:
| Q |
323 |
ttgaacattgaaggttactcatatttcaaacttctgacata-ttgctatgtttgagttgc |
381 |
Q |
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| T |
2272 |
ttgaacattgaaggttactcatatatcaaacttctgacagatttgctatgtttgagttgc |
2213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0952 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0952
Description:
Target: scaffold0952; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 323 - 381
Target Start/End: Original strand, 41 - 100
Alignment:
| Q |
323 |
ttgaacattgaaggttactcatatttcaaacttctgacata-ttgctatgtttgagttgc |
381 |
Q |
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|||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| |
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| T |
41 |
ttgaacattgaaggttactcatatatcaaacttctgacagatttgctatgtttgagttgc |
100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 373
Target Start/End: Complemental strand, 54406397 - 54406309
Alignment:
| Q |
292 |
atccttaagacacccatgatttcaaa------taaatttgaacattgaaggttactcatatttcaaac-ttctgacatattgctatgtt |
373 |
Q |
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||||||||||||||| |||||||||| |||| |||||||||||||||| |||||||||||||| ||||||||||||| |||||| |
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| T |
54406397 |
atccttaagacacccgtgatttcaaacaaaattaaagttgaacattgaaggttgctcatatttcaaactttctgacatattggtatgtt |
54406309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 415
Target Start/End: Complemental strand, 54406245 - 54406208
Alignment:
| Q |
378 |
ttgcgtgttctaatttacttttacttaatgtaacaacc |
415 |
Q |
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||||||||| ||||||||||| |||||||||||||||| |
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| T |
54406245 |
ttgcgtgttgtaatttactttaacttaatgtaacaacc |
54406208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 54406466 - 54406425
Alignment:
| Q |
70 |
acctccctcacaaatctgcaacgtgggaggactccattcaat |
111 |
Q |
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| T |
54406466 |
acctccctcacaaacttgcaacgtgggagaactccattcaat |
54406425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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