View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11029_low_20 (Length: 291)

Name: NF11029_low_20
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11029_low_20
NF11029_low_20
[»] chr6 (17 HSPs)
chr6 (1-274)||(11208954-11209227)
chr6 (1-274)||(11170132-11170405)
chr6 (1-274)||(11275516-11275789)
chr6 (6-274)||(11196305-11196558)
chr6 (193-274)||(11315066-11315147)
chr6 (166-274)||(11155997-11156105)
chr6 (166-274)||(11160864-11160972)
chr6 (166-274)||(11199440-11199548)
chr6 (164-236)||(11132719-11132791)
chr6 (166-274)||(11241756-11241864)
chr6 (6-137)||(11160719-11160850)
chr6 (75-137)||(11155921-11155983)
chr6 (75-137)||(11199364-11199426)
chr6 (85-137)||(11315188-11315240)
chr6 (6-137)||(11241878-11242009)
chr6 (23-71)||(11319818-11319866)
chr6 (82-141)||(11132652-11132711)
[»] scaffold1207 (1 HSPs)
scaffold1207 (97-274)||(546-723)


Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 11208954 - 11209227
Alignment:
Q  1 ttaattccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccat 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11208954 ttaattccaagggacaaaggattgacttccctcaatgtcaaatcttgaaacttttcacaaatctcaccacttgctataaaagcatggacagcagcgccat 11209053  T
Q  101 atgcaaccgcctcatctgcattgatgcttttacataactccgtcccactacccttttcaattccaaagaaatcaatcaaaagttgttgcacttttacaat 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  11209054 atgcaactgcctcatctgcattgatgcttttacataactccgtcccactaccttttttaattccaaagaaatcaatcaaaagttgttgcacttttacaat 11209153  T
Q  201 cctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacactttt 274  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11209154 cctggtagacccgccaacaagcacaacatcatgaatgttactcttcactatcccactatcttctatacactttt 11209227  T

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Target: chr6; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 11170132 - 11170405
Alignment:
Q  1 ttaattccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11170132 ttaattccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcgcaccacttgctataaaagcatggacagcagcgccat 11170231  T
Q  101 atgcaaccgcctcatctgcattgatgcttttacataactccgtcccactacccttttcaattccaaagaaatcaatcaaaagttgttgcacttttacaat 200  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||    
T  11170232 atgcaaccgcctcatctacattgatgtttttacataactccgtcccactacccttattaattccaaagaaatcaatcaaacgttgttgcacttttacaat 11170331  T
Q  201 cctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacactttt 274  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  11170332 cctggtagagccgccaacaagcacaacatcatgaattttactcttcactatcccactatcttctatacactttt 11170405  T

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Target: chr6; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 11275516 - 11275789
Alignment:
Q  1 ttaattccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccat 100  Q
    |||||||||| |||||| ||||| || |||||||||||||||||||||||||||||||||| | |||||||   |||||||||||||| |||||||||||    
T  11275516 ttaattccaatggacaatggattaacttccctcaatgtcaaatcttgaaacttttcacaaagctcaccactcaatataaaagcatggatagcagcgccat 11275615  T
Q  101 atgcaaccgcctcatctgcattgatgcttttacataactccgtcccactacccttttcaattccaaagaaatcaatcaaaagttgttgcacttttacaat 200  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||  |||  ||  | |||| |||||||||||| |||||| | |||||||||||||||    
T  11275616 atgcaaccgcctcatctgcattgatgcttttgcataacttcgtcctgctatgctcattaatttcaaagaaatcaaccaaaaggtcttgcacttttacaat 11275715  T
Q  201 cctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacactttt 274  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||   ||||||||||||| ||||||||||||    
T  11275716 cctggtagacccgccaacaagcacaacatcatgaatgttactcttgtttatcccactatctgctatacactttt 11275789  T

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Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 6 - 274
Target Start/End: Original strand, 11196305 - 11196558
Alignment:
Q  6 tccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgca 105  Q
    |||||||||||||||| |||| |||  ||||   |||||||||| ||| |||| || | |||||||   |||| |||||||||||||||||||||||||     
T  11196305 tccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacagcagcgccatatgcc 11196404  T
Q  106 accgcctcatctgcattgatgcttttacataactccgtcccactacccttttcaattccaaagaaatcaatcaaaagttgttgcacttttacaatcctgg 205  Q
    |||||||||||  ||||||||||||| |||||   | |||| |               | ||||||||| |||  | ||||||||||||||||||||| |    
T  11196405 accgcctcatcgacattgatgcttttgcataaaagcttccccc---------------cgaagaaatcactcaccatttgttgcacttttacaatcctag 11196489  T
Q  206 tagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacactttt 274  Q
    |||||||||||||||| ||||||||||||||| |||| ||  | |||||||||||   |||||||||||    
T  11196490 tagagccgccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacactttt 11196558  T

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Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 193 - 274
Target Start/End: Complemental strand, 11315147 - 11315066
Alignment:
Q  193 tttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacactttt 274  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||| || || ||||||||||| |||| ||||||||    
T  11315147 tttacaatcctagtagagccgccaacaagcacaacatcatgaatgtcactcttgaccatcccactatcctctagacactttt 11315066  T

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Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 274
Target Start/End: Original strand, 11155997 - 11156105
Alignment:
Q  166 aagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttcta 265  Q
    ||||||||| |||  | |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||  | |||||||||||   ||    
T  11155997 aagaaatcactcaccatttgttgcacttttacaatcctggtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaatta 11156096  T
Q  266 tacactttt 274  Q
    |||||||||    
T  11156097 tacactttt 11156105  T

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Target: chr6; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 166 - 274
Target Start/End: Original strand, 11160864 - 11160972
Alignment:
Q  166 aagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttcta 265  Q
    ||||||||| |||  | ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| |||| ||  | |||||||||||   ||    
T  11160864 aagaaatcactcaccatttgttgcacttttacaatcctagtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaatta 11160963  T
Q  266 tacactttt 274  Q
    |||||||||    
T  11160964 tacactttt 11160972  T

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Target: chr6; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 166 - 274
Target Start/End: Original strand, 11199440 - 11199548
Alignment:
Q  166 aagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttcta 265  Q
    ||||||||| |||  | ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| |||| ||  | |||||||||||   ||    
T  11199440 aagaaatcactcaccatttgttgcacttttacaatcctagtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaatta 11199539  T
Q  266 tacactttt 274  Q
    |||||||||    
T  11199540 tacactttt 11199548  T

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Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 11132719 - 11132791
Alignment:
Q  164 caaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaat 236  Q
    ||||||||||| |||| | |||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  11132719 caaagaaatcactcaatatttgttgtacttttacaatcctcgtagacccgccaacaaggacaacatcatgaat 11132791  T

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Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 274
Target Start/End: Complemental strand, 11241864 - 11241756
Alignment:
Q  166 aagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttcta 265  Q
    ||||||||| |||  | |||||||||||||||||||||  ||||||| |||||||| ||||||||||||||| |||| ||  | |||||||||||   ||    
T  11241864 aagaaatcactcaccatttgttgcacttttacaatcctaatagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaatta 11241765  T
Q  266 tacactttt 274  Q
    |||||||||    
T  11241764 tacactttt 11241756  T

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Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 137
Target Start/End: Original strand, 11160719 - 11160850
Alignment:
Q  6 tccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgca 105  Q
    |||||||||||||||| |||| |||  ||||   |||||||||| ||| |||| |  | |||||||   |||| |||||||||||||||||||||||||     
T  11160719 tccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcactacgctcaccactcaatatagaagcatggacagcagcgccatatgcc 11160818  T
Q  106 accgcctcatctgcattgatgcttttacataa 137  Q
    || ||||||||  ||||||||||||| |||||    
T  11160819 actgcctcatcgacattgatgcttttgcataa 11160850  T

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Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 11155921 - 11155983
Alignment:
Q  75 tataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataa 137  Q
    |||| ||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||    
T  11155921 tatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataa 11155983  T

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Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 11199364 - 11199426
Alignment:
Q  75 tataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataa 137  Q
    |||| ||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||    
T  11199364 tatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataa 11199426  T

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Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 11315240 - 11315188
Alignment:
Q  85 tggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataa 137  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||| |||||    
T  11315240 tggacagcagcgccatatgcaaccgccttatcagcattgatgcttttgcataa 11315188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 11242009 - 11241878
Alignment:
Q  6 tccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgca 105  Q
    |||||||||||||| | |||| |||  ||||   |||||||||| ||| |||| || | |||||||   |||| ||||||||||| |||||||||||||     
T  11242009 tccaagggacaaagaaatgacctccgacaatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacaacagcgccatatgcc 11241910  T
Q  106 accgcctcatctgcattgatgcttttacataa 137  Q
    || ||||||||  ||||||||||||| |||||    
T  11241909 acagcctcatcgacattgatgcttttgcataa 11241878  T

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Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 11319866 - 11319818
Alignment:
Q  23 tgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccact 71  Q
    |||| |||||||||||||||||||||||||||||||||| | |||||||    
T  11319866 tgacttccctcaatgtcaaatcttgaaacttttcacaaaactcaccact 11319818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 11132652 - 11132711
Alignment:
Q  82 gcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataactcc 141  Q
    |||||||||||||| ||| ||||||  || ||||||||||| |||||||| |||||||||    
T  11132652 gcatggacagcagcaccacatgcaatagcttcatctgcatttatgcttttgcataactcc 11132711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 97 - 274
Target Start/End: Original strand, 546 - 723
Alignment:
Q  97 ccatatgcaaccgcctcatctgcattgatgcttttacataactccgtcccactacccttttcaattccaaagaaatcaatcaaaagttgttgcactttta 196  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||  ||  | |||| |||||||||||| ||||||   ||| |||||||    
T  546 ccatatgcaaccgcctcatctgcattgatgcttttgcataacttcgtcctactatgctcattaatttcaaagaaatcaaccaaaaggccttgaactttta 645  T
Q  197 caatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacactttt 274  Q
    ||||||| ||||||||||||||||| ||||||||||||| |||||| ||   ||||||||||||| ||||||| ||||    
T  646 caatccttgtagagccgccaacaaggacaacatcatgaaagttactcttgtttatcccactatctgctatacagtttt 723  T

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