View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11029_low_24 (Length: 250)
Name: NF11029_low_24
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11029_low_24 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 4 - 250
Target Start/End: Original strand, 41980378 - 41980624
Alignment:
| Q |
4 |
ggagcagcagagacagtaacaagcttaatccccaaaacattactactcaaatttttcacagtataatgccaagtaaaagcagcaaaacttcccacttctt |
103 |
Q |
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| T |
41980378 |
ggagcaccagaaacagtaacaagcttaatccccaaaacattactactcaaatttttcacagtataatgccaagtaaaagcagcaaaacttcccacttctt |
41980477 |
T |
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| Q |
104 |
tgtaaatatcgactcttgttacattgtttccattgataaacacatcaaaaactctctctccttcttttttcacactcgaatcaatctccgcgaaatgcag |
203 |
Q |
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| T |
41980478 |
tgtaaatatcaactcttgttacattgtttccattgataaacacatcaaaaactctctctccttcttttttcacactcgaatcaatctccgcgaaatgcag |
41980577 |
T |
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| Q |
204 |
ccacaccatatagtccatcttcgcgtccacactcaattcgtactcca |
250 |
Q |
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| T |
41980578 |
ccacaccatatagtccatcttcgcgtccacactcaattcgtactcca |
41980624 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 22084465 - 22084350
Alignment:
| Q |
46 |
ctactcaaatttttcacagtataatgccaagtaaaagcagcaaaacttcccacttctttgtaaatatcgactcttgttacattgtttccattgataaaca |
145 |
Q |
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||||||||||| ||||| |||| |||||||||||| ||||| |||| || |||| |||||||||||| ||||| || | ||| | |||||||| |||| |
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| T |
22084465 |
ctactcaaattcttcactgtatgatgccaagtaaacgcagctaaacccccaacttgtttgtaaatatctactctagtcaaattatcaccattgatgaaca |
22084366 |
T |
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| Q |
146 |
catcaaaaactctctc |
161 |
Q |
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| T |
22084365 |
catcaaacaccctctc |
22084350 |
T |
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