View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11029_low_3 (Length: 494)
Name: NF11029_low_3
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11029_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 477
Target Start/End: Complemental strand, 22562162 - 22561719
Alignment:
| Q |
11 |
gaacctgtgactgttgttataatctggtgggatgaaactcagcatagattaagagttttctgttttcaccatatatactcattccagaagaaagctttga |
110 |
Q |
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| T |
22562162 |
gaacctgtgactgttgttataatctggtggggtgaaactcagcatagaagaagagttttctgttttcaccatacatactcattccagaagaaagctt--- |
22562066 |
T |
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| Q |
111 |
cttgcagtaaaggttgagagatttcaccatatatgatattactccaaaattgaaggtttcttnnnnnnnnnntttgtcgttattttccctttattgttta |
210 |
Q |
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| T |
22562065 |
---------------gagagatttcaccatat--gatattactccaaaattgaaggtttcttcaaaaaaaaat--gtccttatttcccctttattgttta |
22561985 |
T |
|
| Q |
211 |
gtgtctatgttataagtacgaagtatctaccgccgttgagtgtgactaattgtcgttaggaaattttcttacaactgaattttctgcatacgcaagagtc |
310 |
Q |
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| T |
22561984 |
gtgtctatgttataggtacgaagtatttgccgccgttaagtgcgactaattgtcattaggaaattctctcacaactgaattttctgcacacgcaagagtc |
22561885 |
T |
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| Q |
311 |
a-ggatgaaacccttgaccacttttctaaagggctcaaattccttaccagttggactaatcattgatttttactgcattttgtatgtaaaaaataaaggt |
409 |
Q |
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| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
22561884 |
agggatgaaaccc-agaccactttcctaaagggctcaaattccttaccagttggactaatcattggtttttactgcattttgtatgtaaaaaa-aaaggt |
22561787 |
T |
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| Q |
410 |
tttatatgtttgaatctactgcatacattattattcactggtttttactgtctttcttatctagttta |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22561786 |
tttatatgtttgaatctactgcatacattattattcactggtttttactgtctttcttatctagttta |
22561719 |
T |
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