View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11029_low_30 (Length: 238)
Name: NF11029_low_30
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11029_low_30 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 48887798 - 48888020
Alignment:
| Q |
16 |
taagcaactaaaacaagtaagtttttaatgaaaagtaatgcaatcattatttggtcaaatagattgaaatgggttttaacatggtaacttcatcataagt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48887798 |
taagcaactaaaacaagtaagtttttaatgaaaagtaatgcaatcattatttggtcaaatagattgaaatgggttttaacatggtaacttcatcataagt |
48887897 |
T |
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| Q |
116 |
ttataagtcgtagtattatcaattctttacatcttggaataggatctagttctagcttgaaataagtattttgggttgagtaggtttctatttccttatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48887898 |
ttataagtcgtagtattatcaattctttacatcttggaatagtatctagttctagcttgaaataagtattttgggttgagtaggtttctatttccttatt |
48887997 |
T |
|
| Q |
216 |
caggttgtcatagaagacattct |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
48887998 |
caggttgtcatagaagacattct |
48888020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 49731267 - 49731212
Alignment:
| Q |
20 |
caactaaaacaagtaagtttttaatgaaaagtaatgcaatcattatttggtcaaat |
75 |
Q |
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||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||| |
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| T |
49731267 |
caactaaaacaagtaagtttttaataaaaagtagtataattattatttggtcaaat |
49731212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 33148903 - 33148939
Alignment:
| Q |
16 |
taagcaactaaaacaagtaagtttttaatgaaaagta |
52 |
Q |
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| T |
33148903 |
taagcaactaaaataagtaagtttttaataaaaagta |
33148939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 12677824 - 12677883
Alignment:
| Q |
16 |
taagcaactaaaacaagtaagtttttaatgaaaagtaatgcaatcattatttggtcaaat |
75 |
Q |
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||||||||||||||||||||||||||||| ||||||| || |||||||| |||||||||| |
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| T |
12677824 |
taagcaactaaaacaagtaagtttttaataaaaagtagtgtaatcattacttggtcaaat |
12677883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 5525394 - 5525335
Alignment:
| Q |
16 |
taagcaactaaaacaagtaagtttttaatgaaaagtaatgcaatcattatttggtcaaat |
75 |
Q |
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||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||| |
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| T |
5525394 |
taagcaactaaaataagtaagtttttaataaaaagtagtataatcattatttggtcaaat |
5525335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 23797598 - 23797545
Alignment:
| Q |
20 |
caactaaaacaagtaagtttttaatgaaaagtaatgcaatcattatttggtcaa |
73 |
Q |
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|||||||||||||||| ||||||||||||||| ||| ||| |||| |||||||| |
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| T |
23797598 |
caactaaaacaagtaaatttttaatgaaaagtgatgaaattattacttggtcaa |
23797545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 1447663 - 1447606
Alignment:
| Q |
16 |
taagcaactaaaacaagtaagtttttaatgaaaagtaatgcaatcattatttggtcaa |
73 |
Q |
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|||||||| |||| ||||||||||||||||||||||| || ||| |||| |||||||| |
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| T |
1447663 |
taagcaacaaaaataagtaagtttttaatgaaaagtagtgtaattattacttggtcaa |
1447606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 26241714 - 26241655
Alignment:
| Q |
16 |
taagcaactaaaacaagtaagtttttaatgaaaagtaatgcaatcattatttggtcaaat |
75 |
Q |
| |
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|||||||||||||||||||| |||||||| ||||||| | ||| |||||||| |||||| |
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| T |
26241714 |
taagcaactaaaacaagtaactttttaataaaaagtagtataattattatttgatcaaat |
26241655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 33194726 - 33194774
Alignment:
| Q |
16 |
taagcaactaaaacaagtaagtttttaatgaaaagtaatgcaatcatta |
64 |
Q |
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||||||||||||| |||||| |||||||| ||||||| || |||||||| |
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| T |
33194726 |
taagcaactaaaataagtaaatttttaataaaaagtagtgtaatcatta |
33194774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 42061230 - 42061258
Alignment:
| Q |
16 |
taagcaactaaaacaagtaagtttttaat |
44 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
42061230 |
taagcaactaaaacaagtaagtttttaat |
42061258 |
T |
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