View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11029_low_31 (Length: 237)
Name: NF11029_low_31
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11029_low_31 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5811568 - 5811347
Alignment:
| Q |
1 |
taatcataaatctcccgaatataaagtctttttgaacgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaacta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5811568 |
taatcataaatctcccgaatataaagtctttttgaacgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaacta |
5811469 |
T |
|
| Q |
101 |
cgtaatgaaatggaaactgaaatcggcccgtgctacttctctggtgttcctggatccttttatggtaggatcttcccagataaaagtttacattttgtgc |
200 |
Q |
| |
|
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||| |
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|
| T |
5811468 |
cgtaatgaaatggaaactgaaatgggtccttgctacttctctggtgttcctggatccttttatagtaggatctttccagataaaagtttgcattttgtgc |
5811369 |
T |
|
| Q |
201 |
attcttcttacagtcttcaatg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
5811368 |
attcttcttacagtcttcaatg |
5811347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 27736885 - 27736666
Alignment:
| Q |
3 |
atcataaatctcccgaatataaagtctttttgaacgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaactacg |
102 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||| ||||||| | ||||||||||||||||||||| |||||||| |
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|
| T |
27736885 |
atcataaatctcctgaatataaagtatttttgaatgatctaccgggaaatgacttcaacaacgtattcaagtcccttgacaccttcaaagagaaactacg |
27736786 |
T |
|
| Q |
103 |
taatgaaatggaaactgaaatcggcccgtgctacttctctggtgttcctggatccttttatggtaggatcttcccagataaaagtttacattttgtgcat |
202 |
Q |
| |
|
| |||||||||||||| |||| |||||||||||||||| ||| |||||||| || |||||||| || || || |||||||| ||||| |||||||| ||| |
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|
| T |
27736785 |
tgatgaaatggaaactaaaataggcccgtgctacttctatggagttcctggttcattttatggcagaatttttccagataatagtttgcattttgttcat |
27736686 |
T |
|
| Q |
203 |
tcttcttacagtcttcaatg |
222 |
Q |
| |
|
|| || || ||||||||||| |
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|
| T |
27736685 |
tcctcgtatagtcttcaatg |
27736666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 32627923 - 32627705
Alignment:
| Q |
1 |
taatcataaatctcccgaatataaagtctttttgaacgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaacta |
100 |
Q |
| |
|
||||||||||||||||||||||| | | |||||||||||||||||||||||| |||||| | |||||| ||||||||||| ||||||||||||||| |
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|
| T |
32627923 |
taatcataaatctcccgaatatatgatatatttgaacgatctaccgggaaatgacttcaacaccatatttacgtcccttgacattttcaaagaaaaacta |
32627824 |
T |
|
| Q |
101 |
cgtaatgaaatggaaactgaaatcggcccgtgctacttctctggtgttcctggatccttttatggtaggatcttcccagataaaagtttacattttgtgc |
200 |
Q |
| |
|
| | ||||||||| |||||||| || || |||| |||||| || |||||||| |||||| ||||||| || || || | ||||||| |||||||| | |
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|
| T |
32627823 |
cttgatgaaatggggactgaaatgggtccatgcttcttctcaggagttcctggttcctttcatggtagaatttttcctcttcaaagtttgcattttgttc |
32627724 |
T |
|
| Q |
201 |
attcttcttacagtcttca |
219 |
Q |
| |
|
|||| ||||| || ||||| |
|
|
| T |
32627723 |
attcctcttatagccttca |
32627705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 32704151 - 32703938
Alignment:
| Q |
1 |
taatcataaatctcccgaatataaa----gtctttttgaacgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaa |
96 |
Q |
| |
|
||||||||||||||| ||||||| | |||||||||||||||||||| || || || |||||| | ||||||| |||||| ||||| ||||||||||| |
|
|
| T |
32704151 |
taatcataaatctcctgaatatatataaggtctttttgaacgatctaccagggaacgacttcaacaatgtatttaggtccctcgacacgttcaaagaaaa |
32704052 |
T |
|
| Q |
97 |
actacgtaatgaaatggaaactgaaatcggcccgtgctacttctctggtgttcctggatccttttatggtaggatcttcccagataaaagtttacatttt |
196 |
Q |
| |
|
|||| |||||||||||| ||||| | || |||||||||| ||| ||||| || ||||| ||||| ||||| || || |||||||||| |||||| |
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|
| T |
32704051 |
tctacaggctgaaatggaaaccgaaatggtaccttgctacttctttggggttcccggttccttctatggcaggatttttcctaataaaagtttgcatttt |
32703952 |
T |
|
| Q |
197 |
gtgcattcttctta |
210 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
32703951 |
gttcattcctctta |
32703938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 7293599 - 7293456
Alignment:
| Q |
10 |
atctcccgaatataaagtctttttgaacgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaactacgtaatgaa |
109 |
Q |
| |
|
|||||||||||| || ||||||| |||||||| | || ||||| |||||| || | |||| ||| ||||| | ||| ||| | ||||||| | ||||| |
|
|
| T |
7293599 |
atctcccgaatacaagatcttttttaacgatctttcagggaatgacttcaacaacatttttaagtcacttgatagctttaaacataaactacttgatgaa |
7293500 |
T |
|
| Q |
110 |
atggaaactgaaatcggcccgtgctacttctctggtgttcctgg |
153 |
Q |
| |
|
|| |||||||||| |||| |||||||||| |||||||||||| |
|
|
| T |
7293499 |
atcaaaactgaaatgagcccttgctacttctttggtgttcctgg |
7293456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 204
Target Start/End: Original strand, 20115889 - 20116091
Alignment:
| Q |
2 |
aatcataaatctcccgaatataaagtctttttgaacgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaactac |
101 |
Q |
| |
|
|||||| ||||||| |||||| | |||| ||||||||||||| | ||||| || ||||||| | |||||| |||||||||||||||||||||||| || |
|
|
| T |
20115889 |
aatcatgaatctcctgaatatgatgtctctttgaacgatctatccggaaacgacttcaacggcatatttaagtcccttgacaccttcaaagaaaagcttt |
20115988 |
T |
|
| Q |
102 |
gtaatgaaatggaaactgaaatcggcccgtgctacttctctggtgttcctggatccttttatggtaggatcttcccagataaaagtttacattttgtgca |
201 |
Q |
| |
|
||||||| |||||| | |||| || || |||||||||||||||||||| || ||||||||||| || || ||||| || | ||||||||||| || || |
|
|
| T |
20115989 |
ctaatgaattggaaaataaaatgggtccttgctacttctctggtgttcccggttccttttatggcagaattttccctaatgagagtttacatttagttca |
20116088 |
T |
|
| Q |
202 |
ttc |
204 |
Q |
| |
|
||| |
|
|
| T |
20116089 |
ttc |
20116091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 21943770 - 21943661
Alignment:
| Q |
2 |
aatcataaatctcccgaatataaagtctttttgaacgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaactac |
101 |
Q |
| |
|
|||||| |||||||||||||||| || ||||||||||||||||| ||||| ||||||||| ||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
21943770 |
aatcatgaatctcccgaatataaggtatttttgaacgatctacccggaaacgatttcaacaacgtatttaggtcccttgagaccttcaaagaaaaacttt |
21943671 |
T |
|
| Q |
102 |
gtaatgaaat |
111 |
Q |
| |
|
|||||||||| |
|
|
| T |
21943670 |
gtaatgaaat |
21943661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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