View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11029_low_32 (Length: 236)
Name: NF11029_low_32
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11029_low_32 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] scaffold1652 (2 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0902 (1 HSPs) |
| | |
|
| [»] scaffold1176 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 37245379 - 37245162
Alignment:
| Q |
19 |
gctcgatcaccaccatcatcatcgcccatgttttctccgtttccatcacctataatttctccctccgctaactcaccagtggcatctgctcctcttcctg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37245379 |
gctcgatcaccaccatcatcatcgcccatgttttctccgtttccatcaccaataatttctccctccgctaactcaccagtggcatctgctcctcttcctg |
37245280 |
T |
|
| Q |
119 |
gtgctccatctccttcaccgttcgccgtcaactcaccagcatctcctcctcccgctgccgctcctgattctccagctgccgctgcttctcccgttgccgc |
218 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37245279 |
gtgcttcatctccttcaccgttcgccatcaactcaccagcatctgctcctcccgctgccgctcctggttctccagctgccgctgcttctcccgttgccgc |
37245180 |
T |
|
| Q |
219 |
tcctgctgtgactccatc |
236 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37245179 |
tcctgctgtgactccatc |
37245162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 37242248 - 37242199
Alignment:
| Q |
121 |
gctccatctccttcaccgttcgccgtcaactcaccagcatctcctcctcc |
170 |
Q |
| |
|
||||||||||||||||||||||| || |||| ||| ||||||||||||| |
|
|
| T |
37242248 |
gctccatctccttcaccgttcgcagttaactatccaacatctcctcctcc |
37242199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 40 - 121
Alignment:
| Q |
29 |
caccatcatcatcgcccatgttttctccgtttccatcacctataatttctccctccgctaactcaccagtggcatctgctcc |
110 |
Q |
| |
|
||||| ||||||| |||| || ||||||||||||||||||| ||||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
40 |
caccaccatcatcacccaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctcc |
121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 110
Target Start/End: Original strand, 402 - 439
Alignment:
| Q |
73 |
atttctccctccgctaactcaccagtggcatctgctcc |
110 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
402 |
atttctccctccgctaactcaacggtggcatctgctcc |
439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 165066 - 165154
Alignment:
| Q |
19 |
gctcgatcaccaccatcatcatcgcccatgttttctccgtttccatcacctataatttctccctccgctaactcaccagtggcatctgctcc |
110 |
Q |
| |
|
|||||||||||||||||||| | |||| || ||||||||||||||||||| ||||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
165066 |
gctcgatcaccaccatcatc--ccccca-gtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtcttctcc |
165154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 14248660 - 14248572
Alignment:
| Q |
19 |
gctcgatcaccaccatcatcatcgcccatgttttctccgtttccatcacctataatttctccctccgctaactcaccagtggcatctgctcc |
110 |
Q |
| |
|
|||||||||||||||||||| | |||| || ||||||||||||||||||| ||||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
14248660 |
gctcgatcaccaccatcatc--ccccca-gtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtcttctcc |
14248572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 3762 - 3688
Alignment:
| Q |
36 |
atcatcgcccatgttttctccgtttccatcacctataatttctccctccgctaactcaccagtggcatctgctcc |
110 |
Q |
| |
|
|||||| |||| || ||||||||||||||||||| ||||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
3762 |
atcatcccccaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctcc |
3688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 1256 - 1320
Alignment:
| Q |
29 |
caccatcatcatcgcccatgttttctccgtttccatcacctataatttctccctccgctaactca |
93 |
Q |
| |
|
|||||||| |||| |||| || ||||||||||||||| ||| ||||||||||| ||||||||| |
|
|
| T |
1256 |
caccatcaacatcccccaagtcttctccgtttccatctcctgcgatttctccctcagctaactca |
1320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University