View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11029_low_34 (Length: 232)
Name: NF11029_low_34
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11029_low_34 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 23883427 - 23883640
Alignment:
| Q |
19 |
agattttgaaggtttgaatttggctagtttccataagatcgagcttcattttcactcgcaagtaatggttctacgctttcagatagtaaatgagggactg |
118 |
Q |
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| T |
23883427 |
agattttgaaggtttgaatttggctagtttccataagatcgagcttcattttcactcgcaagtagtggttttacgctttcagatagtaaatgagggactg |
23883526 |
T |
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| Q |
119 |
tggcaggtaagagtatagtgcaaaacatcagacattaagtggagtgggattgggaaattgtggagtgctttaatgtctgatgttttgcaacatagtagat |
218 |
Q |
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| T |
23883527 |
tggcaggtaagagtatagtgcaaaacatcagacattaagtgaagtgggattggaaaattgtggagtgctttaatgtctgatgttttgcaacatagtagat |
23883626 |
T |
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| Q |
219 |
cagttgtggaaatt |
232 |
Q |
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| T |
23883627 |
cagttgtggaaatt |
23883640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 23419879 - 23419728
Alignment:
| Q |
22 |
ttttgaaggtttgaatttggctagtttccataagatcgagcttcattttcactcgcaagtaatggttctacgctttcagatagtaaatgagggac--tgt |
119 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| | | || ||| |||||||||||||| | ||||||||||||||| ||| |
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| T |
23419879 |
ttttgaaggtttgaatttggctggtttccataagatcgagcttcattttgagttgctagt---ggttctacgctttcggctagtaaatgagggacggtgt |
23419783 |
T |
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| Q |
120 |
ggcaggtaagagtatagtgcaaaacatcagacattaagtggagtgggattgggaa |
174 |
Q |
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| T |
23419782 |
ggcaggtcggagtatagtgcaaaacattagacattaaatggagcaggattgggaa |
23419728 |
T |
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