View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11029_low_38 (Length: 216)
Name: NF11029_low_38
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11029_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 32627882 - 32628067
Alignment:
| Q |
19 |
agatcgttcaaaaatatcatatattcgggagatttatgattaagttttcgacaaagcttttccacaactttgataatatctaagatcaccaacaaagtgt |
118 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32627882 |
agatcgttcaaatatatcatatattcgggagatttatgattaagttttcgacaaagcttttccacaactttgataatatctaagatcaccaacaaagtgt |
32627981 |
T |
|
| Q |
119 |
ttgatccagaagagcaacctaagtctgcaattgtcaagcttttggagagtgtgttgttgtacatgctggttatggcttcatctctc |
204 |
Q |
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| T |
32627982 |
ttgatccagaagagcaacctaagtctgcaattgtcaagcttttggagagtgtgttgttgtacatgctggttatggcttcatctctc |
32628067 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 37 - 204
Target Start/End: Original strand, 32704128 - 32704295
Alignment:
| Q |
37 |
atatattcgggagatttatgattaagttttcgacaaagcttttccacaactttgataatatctaagatcaccaacaaagtgtttgatccagaagagcaac |
136 |
Q |
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|||||||| ||||||||||||||||| | |||||||| |||||||||||| |||||| ||||| ||||| ||||||||||||||| |||| ||||||||| |
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| T |
32704128 |
atatattcaggagatttatgattaagctctcgacaaatcttttccacaaccttgatagtatctgagatcgccaacaaagtgtttggtccataagagcaac |
32704227 |
T |
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| Q |
137 |
ctaagtctgcaattgtcaagcttttggagagtgtgttgttgtacatgctggttatggcttcatctctc |
204 |
Q |
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| || |||||||||| ||||||| ||| |||||| || ||||||||| | ||||||||||| |||||| |
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| T |
32704228 |
ccaaatctgcaattgccaagcttatggggagtgttttattgtacatgtttgttatggcttcttctctc |
32704295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 32709841 - 32709952
Alignment:
| Q |
40 |
tattcgggagatttatgattaagttttcgacaaagcttttccacaactttgataatatctaagatcaccaacaaagtgtttgatccagaagagcaaccta |
139 |
Q |
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| T |
32709841 |
tattcgggagattcatgattcaactctcgacaaagcttttccacgaccttgataaattctgataccaccaacaaagtgtttggcccagaagagcaaccca |
32709940 |
T |
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| Q |
140 |
agtctgcaattg |
151 |
Q |
| |
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|||||||||||| |
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| T |
32709941 |
agtctgcaattg |
32709952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 70 - 203
Target Start/End: Original strand, 7298092 - 7298225
Alignment:
| Q |
70 |
caaagcttttccacaactttgataatatctaagatcaccaacaaagtgtttgatccagaagagcaacctaagtctgcaattgtcaagcttttggagagtg |
169 |
Q |
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|||||||| |||||||| ||||||||||| | | ||| ||||||||||||| ||||||||| |||||||| |||||||||| | ||||||| | |||| |
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| T |
7298092 |
caaagcttctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaattgcaaggcttttgaaaagtg |
7298191 |
T |
|
| Q |
170 |
tgttgttgtacatgctggttatggcttcatctct |
203 |
Q |
| |
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| ||| ||| | ||| ||||||||||||||||| |
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| T |
7298192 |
ttttggagtagaggcttgttatggcttcatctct |
7298225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 5811527 - 5811712
Alignment:
| Q |
19 |
agatcgttcaaaaatatcatatattcgggagatttatgattaagttttcgacaaagcttttccacaactttgataatatctaagatcaccaacaaagtgt |
118 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||| || |||||||||| ||||||| |
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| T |
5811527 |
agatcgttcaaaaagactttatattcgggagatttatgattaagttctcgacaaagcttttcaacaaccttgataatttcagagatcaccaagaaagtgt |
5811626 |
T |
|
| Q |
119 |
ttgatccagaagagcaacctaagtctgcaattgtcaagcttttggagagtgtgttgttgtacatgctggttatggcttcatctctc |
204 |
Q |
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||| |||| |||||||||| ||||||||||||| ||||||| | | ||||||||| ||| | |||||||| ||||| |||||| |
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| T |
5811627 |
ttggtccaaaagagcaacccaagtctgcaattgccaagcttctaggaagtgtgttgcagtatagactggttatagcttcgtctctc |
5811712 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 20115909 - 20115800
Alignment:
| Q |
39 |
atattcgggagatttatgattaagttttcgacaaagcttttccacaactttgataatatctaagatcaccaacaaagtgtttgatccagaagagcaacct |
138 |
Q |
| |
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|||||| ||||||| |||||| | || | |||||||||||||||||| |||||||| ||| ||||||||||||| ||||||| ||| |||||||||||| |
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| T |
20115909 |
atattcaggagattcatgattcaattctatacaaagcttttccacaaccttgataatttctgagatcaccaacaaggtgtttggtcctgaagagcaacct |
20115810 |
T |
|
| Q |
139 |
aagtctgcaa |
148 |
Q |
| |
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|||||||||| |
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| T |
20115809 |
aagtctgcaa |
20115800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 21943730 - 21943859
Alignment:
| Q |
19 |
agatcgttcaaaaatatcatatattcgggagatttatgattaagttttcgacaaagcttttccacaactttgataatatctaagatcaccaacaaagtgt |
118 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| |||||| | | | ||||||||||||||||||| || ||||| || |||||||||||||||| | |
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| T |
21943730 |
agatcgttcaaaaataccttatattcgggagattcatgattcaactcttgacaaagcttttccacaacatttataatctccgagatcaccaacaaagtat |
21943829 |
T |
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| Q |
119 |
ttgatccagaagagcaacctaagtctgcaa |
148 |
Q |
| |
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|| ||||||||| ||||| |||||||||| |
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| T |
21943830 |
ttagtccagaagaacaacccaagtctgcaa |
21943859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 27736846 - 27737001
Alignment:
| Q |
19 |
agatcgttcaaaaatatcatatattcgggagatttatgattaagttttcgacaaagcttttccacaactttgataatatctaagatcaccaacaaagtgt |
118 |
Q |
| |
|
||||| |||||||||| ||||||| ||||||||||||| | | | ||||||| ||||||||| |||||||||| ||| | |||||||||| ||||| |
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| T |
27736846 |
agatcattcaaaaatactttatattcaggagatttatgatgatgcacttgacaaagtttttccacacctttgataatttctgatatcaccaacatagtgt |
27736945 |
T |
|
| Q |
119 |
ttgatccagaagagcaacctaagtctgcaattgtcaagcttttggagagtgtgttg |
174 |
Q |
| |
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||| ||| |||||||||| ||||||||||||| ||||||| ||| ||||||||| |
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| T |
27736946 |
ttggcccaaaagagcaacccaagtctgcaattgccaagcttctgggaagtgtgttg |
27737001 |
T |
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