View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11029_low_39 (Length: 212)
Name: NF11029_low_39
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11029_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 41981159 - 41980958
Alignment:
| Q |
1 |
tccgcccgctacctcctccgcaccttcaccgtctatgacaactacgacgcaaagtctcgtcctccttccttcgatgtcgcactctcctccaccatcattt |
100 |
Q |
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| T |
41981159 |
tccgcccgctacctcctccgcaccttcaccgtctacgacaactacgacgcaaagtctcgtcctccttccttcgacgtcgcactctcctccaccatcattt |
41981060 |
T |
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| Q |
101 |
tcaactggcgttctccctggcctgaatccacagcacgcgacggcgcttatgctgatcttttcgcttttcttcacactccctccgccgctgatctctgctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41981059 |
tcaactggcgttctccctggcctgaatccacagcacgcgacggcgcttatgctgatcttttcgcttttcttcacactccctccgccgctgatctttgctt |
41980960 |
T |
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| Q |
201 |
ct |
202 |
Q |
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|| |
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| T |
41980959 |
ct |
41980958 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 22083702 - 22083769
Alignment:
| Q |
7 |
cgctacctcctccgcaccttcaccgtctatgacaactacgacgcaaagtctcgtcctccttccttcga |
74 |
Q |
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||||||||| | ||||||||| |||||| ||||||||||||| ||||| | ||||||||||||||| |
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| T |
22083702 |
cgctacctcattcgcaccttcgtcgtctacgacaactacgacggcaagtcgcatcctccttccttcga |
22083769 |
T |
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