View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11029_low_4 (Length: 465)
Name: NF11029_low_4
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11029_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 34382942 - 34382689
Alignment:
| Q |
16 |
atcaaatcatgtttcatttaatttaatgatgagatttattgaacagaaacaatcttatctattgtgcaagatttatcttcctaatgcaccatagacttga |
115 |
Q |
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| T |
34382942 |
atcaaatcatgtttcatttaatttaatgatgagatttattgaacagaaacaatcttatctattgtgcaagatttatcttcctaatgcaccatagacttga |
34382843 |
T |
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| Q |
116 |
tcatattaatattgagtttttcgttgagtagaatcaaatagttcttaatacccccacaattatcgttatagatgaaccaataaaaaactcttaactaacc |
215 |
Q |
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| T |
34382842 |
tcatattaatattgagtttttcgttgagtagaatcaaatagttcttaata-ccccacaattatcgttatagatgaaccaataaaaaactcttaactaacc |
34382744 |
T |
|
| Q |
216 |
acttaagtactaaaaaatatagttatacccttttcaatgctcaaagagattcgac |
270 |
Q |
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| T |
34382743 |
acttaagtactaaaaaatatagttatacccttttcaatgctcaaagagattcgac |
34382689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 318 - 455
Target Start/End: Complemental strand, 34382641 - 34382504
Alignment:
| Q |
318 |
caagcaatacatctcaatttgtctatctaagagagctaatttgataaagggaagcaaaatgtaaacatagagagctacacatttatctcctaatccatta |
417 |
Q |
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| T |
34382641 |
caagcaatacatctcaatttgtctatctaagagagctaatttgataaagggaagcaaaatgtaaacatagagagctacacatttatctcctaatccatta |
34382542 |
T |
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| Q |
418 |
actatctctaacagcttttctcacattttgagtttcat |
455 |
Q |
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| T |
34382541 |
actatctctaacagcttttctcacattttgagtttcat |
34382504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 34366830 - 34366617
Alignment:
| Q |
15 |
aatcaaatcatgtttcatttaatttaatgatgagatttattgaacagaaacaatcttatctattgtgcaagatttatcttcctaatgcaccatagacttg |
114 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||| |||||||| |||| ||| ||| ||||||||| ||| || |||| |||||||||| |
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| T |
34366830 |
aatcaaatcatatttcattt----taatgatgagatttattgaactgaaacaatgttatatatagtgtaagatttattttc-tagtgcatcatagacttg |
34366736 |
T |
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| Q |
115 |
atcatattaatattgagtttttcgttgagtagaatcaaatagttcttaatacccccacaattatcgttatagatgaaccaat--aaaaaactcttaacta |
212 |
Q |
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| T |
34366735 |
atcatattaatattgagttttttattgagtagaatcaaaaaattcttaata-cctcacaattgtagttatagatgaaccaataaaaaaaactcttaacga |
34366637 |
T |
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| Q |
213 |
accacttaagtactaaaaaa |
232 |
Q |
| |
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| T |
34366636 |
accacttaagtactaaaaaa |
34366617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 365 - 444
Target Start/End: Complemental strand, 34368076 - 34367997
Alignment:
| Q |
365 |
agggaagcaaaatgtaaacatagagagctacacatttatctcctaatccattaactatctctaacagcttttctcacatt |
444 |
Q |
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|||||||||||||||||||| |||||||| ||||||||| || |||||||||||| ||||||||||| |||||||||||| |
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| T |
34368076 |
agggaagcaaaatgtaaacaaagagagctgcacatttatatcttaatccattaaccatctctaacaggttttctcacatt |
34367997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 45806889 - 45806931
Alignment:
| Q |
15 |
aatcaaatcatgtttcatttaatttaatgatgagatttattga |
57 |
Q |
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| T |
45806889 |
aatcacatcatgttttatttaatttaatgatgagatttattga |
45806931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 57
Target Start/End: Complemental strand, 19514028 - 19513998
Alignment:
| Q |
27 |
tttcatttaatttaatgatgagatttattga |
57 |
Q |
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| T |
19514028 |
tttcatttaatttaatgatgagatttattga |
19513998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 6863123 - 6863087
Alignment:
| Q |
21 |
atcatgtttcatttaatttaatgatgagatttattga |
57 |
Q |
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| T |
6863123 |
atcatatttcatttaatttaatggtgagatttattga |
6863087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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