View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11029_low_7 (Length: 428)

Name: NF11029_low_7
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11029_low_7
NF11029_low_7
[»] chr7 (15 HSPs)
chr7 (1-326)||(28950434-28950765)
chr7 (320-422)||(28949654-28949756)
chr7 (1-110)||(3203822-3203931)
chr7 (1-160)||(31860750-31860909)
chr7 (1-101)||(31860840-31860940)
chr7 (5-110)||(3203912-3204017)
chr7 (26-160)||(35153469-35153602)
chr7 (1-69)||(3203683-3203751)
chr7 (150-201)||(31861131-31861183)
chr7 (1-160)||(3203682-3203841)
chr7 (1-75)||(35153241-35153315)
chr7 (9-159)||(35153541-35153691)
chr7 (1-110)||(31860660-31860769)
chr7 (295-382)||(31861178-31861267)
chr7 (51-115)||(3203997-3204061)
[»] chr1 (3 HSPs)
chr1 (40-422)||(9846140-9846531)
chr1 (39-139)||(9846018-9846118)
chr1 (71-160)||(20806969-20807058)
[»] chr4 (13 HSPs)
chr4 (57-232)||(10982360-10982534)
chr4 (140-252)||(43108161-43108273)
chr4 (4-146)||(43107898-43108040)
chr4 (39-178)||(3343025-3343164)
chr4 (1-146)||(39289989-39290134)
chr4 (1-146)||(3343751-3343896)
chr4 (9-89)||(3343512-3343592)
chr4 (1-115)||(43107985-43108094)
chr4 (1-105)||(3343188-3343293)
chr4 (1-110)||(26561694-26561803)
chr4 (51-110)||(39289949-39290008)
chr4 (9-75)||(3343732-3343798)
chr4 (1-77)||(39290079-39290155)
[»] chr5 (10 HSPs)
chr5 (141-250)||(10927857-10927966)
chr5 (9-115)||(12513072-12513175)
chr5 (1-77)||(12513284-12513360)
chr5 (9-115)||(10927939-10928045)
chr5 (58-160)||(10927984-10928086)
chr5 (38-160)||(12513114-12513236)
chr5 (1-115)||(18960697-18960810)
chr5 (16-115)||(18960622-18960721)
chr5 (1-69)||(18960518-18960585)
chr5 (168-231)||(30840226-30840290)
[»] chr8 (2 HSPs)
chr8 (15-101)||(9321595-9321681)
chr8 (159-250)||(9321499-9321590)
[»] chr2 (7 HSPs)
chr2 (2-146)||(11879865-11880009)
chr2 (140-252)||(35711692-35711804)
chr2 (295-422)||(29939489-29939620)
chr2 (156-251)||(38179713-38179809)
chr2 (79-160)||(11880047-11880128)
chr2 (40-111)||(18483145-18483216)
chr2 (10-95)||(38179620-38179705)
[»] chr6 (1 HSPs)
chr6 (153-231)||(8037658-8037736)
[»] chr3 (2 HSPs)
chr3 (298-422)||(17748009-17748136)
chr3 (298-422)||(19049329-19049456)


Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 28950765 - 28950434
Alignment:
Q  1 caacaagacaagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaacca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||    
T  28950765 caacaagacaagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcaataaaccaagtgttgtgactcacgaggaatacatacaacaagcca 28950666  T
Q  101 agtgttaagatgaatgaatgcaagaagttaagttttacccatgcaacatatcaagtgtcaagaggagtacatgcaacaaccaaatgttactcatacaata 200  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  28950665 agtgtcaagatgaatgaatgcaacaagttaagttttacccatgcaacaaatcaagtgtcaagaggagtacatgcaacaaccaagtgttactcatgcaata 28950566  T
Q  201 actcaaatgtcatgacgaatgcatgcaacaattcgattgttatccatgcagtnnnnnnntgtcattaaaattacatgcaagaagtcaagtgt------ta 294  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||       ||||||||| |||||||||||||||||||||||      ||    
T  28950565 actcaaatgtcatgacgaatgcatgcaacaattcaattgttatccatgcagtaaaaaagtgtcattaagattacatgcaagaagtcaagtgttattcata 28950466  T
Q  295 caataaaacatatctctttaatctgccctcat 326  Q
    |||||||||||||||||||  |||||||||||    
T  28950465 caataaaacatatctctttcttctgccctcat 28950434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 320 - 422
Target Start/End: Complemental strand, 28949756 - 28949654
Alignment:
Q  320 ccctcatgaatcccaccctctttctttttcattaactcacaaaacctccactctctttcatctcattgttttcttctgaaaatgacatctcacttcttct 419  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28949756 ccctcatgaatcccaccccctttctttttcattaactcacaaaacctccactctctttcatctcattgttttcttctgaaaatgacatctctcttcttct 28949657  T
Q  420 ctc 422  Q
    |||    
T  28949656 ctc 28949654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 3203931 - 3203822
Alignment:
Q  1 caacaagacaagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaacca 100  Q
    ||||||| ||||||| ||||| || ||||||| ||| |||| ||||||| |||| |||||||||| ||| ||||||| ||||||||||| |||||| |||    
T  3203931 caacaagtcaagtgttaagagaaatacatgtagcaagtcaaatgttacccatgcaataaaccaagcgtcatgactcatgaggaatacatccaacaagcca 3203832  T
Q  101 agtgttaaga 110  Q
    ||||| ||||    
T  3203831 agtgtcaaga 3203822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 31860750 - 31860909
Alignment:
Q  1 caacaagacaagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaacca 100  Q
    ||||||| |||||||||||| | | ||||||| |||  |||||||||| ||||| || ||||||| ||  |  |||  || ||||||||||||||| |||    
T  31860750 caacaagccaagtgtcaagaaggatacatgtagcaacccaagtgttacatatgcaatgaaccaagagttattgctcgtgaagaatacatacaacaagcca 31860849  T
Q  101 agtgttaagatgaatgaatgcaagaagttaagttttacccatgcaacatatcaagtgtca 160  Q
    | |||||||| ||||  |||||| |||| |||| |||||||||||| | |||||||||||    
T  31860850 aatgttaagaggaatccatgcaacaagtcaagtgttacccatgcaataaatcaagtgtca 31860909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 31860840 - 31860940
Alignment:
Q  1 caacaagacaagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaacca 100  Q
    ||||||| ||| ||| ||||||||  |||| ||||| |||||||||||| |||| ||||| |||||||| |||||||  |||||||||| |||||| |||    
T  31860840 caacaagccaaatgttaagaggaatccatgcaacaagtcaagtgttacccatgcaataaatcaagtgtcatgactcataaggaatacatgcaacaagcca 31860939  T
Q  101 a 101  Q
    |    
T  31860940 a 31860940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 3204017 - 3203912
Alignment:
Q  5 aagacaagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaaccaagtg 104  Q
    ||||||||||| |||| ||| ||||| | | |  |||||||||| ||||| |||||||||||||| ||| ||| || |||||||| ||||||  ||||||    
T  3204017 aagacaagtgtaaagaagaatacatgcatctagccaagtgttacatatgcaataaaccaagtgtcatgaatcatgatgaatacatgcaacaagtcaagtg 3203918  T
Q  105 ttaaga 110  Q
    ||||||    
T  3203917 ttaaga 3203912  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 160
Target Start/End: Original strand, 35153469 - 35153602
Alignment:
Q  26 acatgtaacaattcaagtgtta-cctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaaccaagtgttaagatgaatgaatgcaag 124  Q
    ||||| |||||| ||||||| | || |||| |||||||||||||||  ||||| ||| ||||||| ||||||||||||||| |||| ||||  || || |    
T  35153469 acatgcaacaatccaagtgtcaacccatgcaataaaccaagtgtcg--actcatgagcaatacatgcaacaaaccaagtgtcaagaggaatacatccagg 35153566  T
Q  125 aagttaagttttacccatgcaacatatcaagtgtca 160  Q
    |||  |||| |||||||||||| | | |||||||||    
T  35153567 aagccaagtattacccatgcaataaaccaagtgtca 35153602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 3203751 - 3203683
Alignment:
Q  1 caacaagacaagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtc 69  Q
    ||||||| ||||| |||||||||| ||||| ||||| |||| ||||| | |||| ||||||||||||||    
T  3203751 caacaagtcaagtctcaagaggaatacatgcaacaagtcaactgttatccatgcaataaaccaagtgtc 3203683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 31861131 - 31861183
Alignment:
Q  150 atcaagtgtcaagaggagtacatgcaac-aaccaaatgttactcatacaataa 201  Q
    ||||||||||||||||| |||||||||| |||||||||||| |||| ||||||    
T  31861131 atcaagtgtcaagaggattacatgcaacaaaccaaatgttattcatgcaataa 31861183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 3203841 - 3203682
Alignment:
Q  1 caacaagacaagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaacca 100  Q
    ||||||| ||||||||||||| || ||||| |  ||  ||| ||||||| |||  ||||| |||||||| ||||||| ||||||||||  ||||||  ||    
T  3203841 caacaagccaagtgtcaagagaaatacatgcagaaagccaaatgttacccatgtcataaaacaagtgtcatgactcatgaggaatacaggcaacaagtca 3203742  T
Q  101 agtgttaagatgaatgaatgcaagaagttaagttttacccatgcaacatatcaagtgtca 160  Q
    ||| | |||| ||||  |||||| |||| || | ||| |||||||| | | |||||||||    
T  3203741 agtctcaagaggaatacatgcaacaagtcaactgttatccatgcaataaaccaagtgtca 3203682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 35153241 - 35153315
Alignment:
Q  1 caacaagacaagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgact 75  Q
    |||||||||||||||||||||||| ||||  ||||  |||||||| ||  |||| ||||||||| |||| |||||    
T  35153241 caacaagacaagtgtcaagaggaatacatacaacagatcaagtgtcactcatgcaataaaccaaatgtcatgact 35153315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 35153541 - 35153691
Alignment:
Q  9 caagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaaccaagtgttaa 108  Q
    |||||||||||||||| ||||  |  ||  ||||| ||||| |||| |||||||||||||| ||| |||  |||||||||| |||| |  ||||||| ||    
T  35153541 caagtgtcaagaggaatacatccaggaagccaagtattacccatgcaataaaccaagtgtcatgattcataaggaatacatgcaaccagtcaagtgtcaa 35153640  T
Q  109 gatgaatgaatgcaagaagttaagttttacccatgcaacatatcaagtgtc 159  Q
    ||  |||  |||||  |||| |||| |||||| ||||| | ||||||||||    
T  35153641 gagaaatatatgcagcaagtcaagtgttacccgtgcaataaatcaagtgtc 35153691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 31860660 - 31860769
Alignment:
Q  1 caacaagacaagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaacca 100  Q
    ||||||| ||| | ||| |||||| ||||| ||||| |||||||||||  |||| ||||||||||||||   || || ||| |||| || |||||| |||    
T  31860660 caacaagccaaatatcaggaggaatacatgcaacaagtcaagtgttactcatgcaataaaccaagtgtcacaacccatgagaaatatatgcaacaagcca 31860759  T
Q  101 agtgttaaga 110  Q
    ||||| ||||    
T  31860760 agtgtcaaga 31860769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 382
Target Start/End: Original strand, 31861178 - 31861267
Alignment:
Q  295 caataaaacatatctctttaatctgccctcatgaatc-ccaccctctttctttttcattaactca-caaaacctccactctctttcatct 382  Q
    |||||||||||||||||||  ||| ||||||| |||| | |||| || ||||| |||| |||||| ||||||| ||||||||| ||||||    
T  31861178 caataaaacatatctctttcttcttccctcataaatctcaaccccctctctttctcatgaactcaccaaaacccccactctctatcatct 31861267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 3204061 - 3203997
Alignment:
Q  51 atgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaaccaagtgttaagatgaat 115  Q
    |||| |||||||||||||| ||||||| ||||||||||| ||| ||  ||||||| |||| ||||    
T  3204061 atgcaataaaccaagtgtcatgactcatgaggaatacatgcaataagacaagtgtaaagaagaat 3203997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 40 - 422
Target Start/End: Original strand, 9846140 - 9846531
Alignment:
Q  40 aagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaaccaagtgttaagatgaatgaatgcaagaagttaagttttacc 139  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| |||| |||  ||||| ||| || ||| ||||| |||||    
T  9846140 aagtgttacctatgcaataaaccaagtgtcatgactcacgaggaatacatacaacaagccatgtgtcaagtggaatgcatgaaacaagctaagtgttacc 9846239  T
Q  140 catgcaacatatcaagtgtcaagaggagtacatgcaacaaccaaatgttactcatacaataactcaaatgtcatgacgaatgcatgcaacaattcgattg 239  Q
    ||| ||||| | ||||||| ||||  | |||||||||||||||| |||||  ||  ||||||| |||||||| ||| |||| ||| ||||||  | ||||    
T  9846240 catacaacaaaccaagtgttaagaaaaatacatgcaacaaccaattgttatccacgcaataacccaaatgtcgtgaggaatacatacaacaacccaattg 9846339  T
Q  240 ttatccatgcagt-nnnnnnntgtcattaaaattacatgcaagaagtcaagtgtta------caataaaacatatctctttaatctgccctcatgaatcc 332  Q
    |||||||  ||||        ||||   |  | ||| ||||| ||| ||| | |||      || ||||||||||||||||  || |||||||| |||||    
T  9846340 ttatccacacagtaaaccaagtgtcgagaggactacgtgcaacaagccaaatattatacatgcactaaaacatatctctttcttcagccctcattaatcc 9846439  T
Q  333 c-accctctttctttttcattaactca-caaaacctccactctctttcatctcattgttttcttctgaaaatgacatctcacttcttctctc 422  Q
    | |||||||||||||||||| |||||| |||||||||||||||||  | | |||||  |||||| ||||||||  ||||| |||||||||||    
T  9846440 caaccctctttctttttcatgaactcaccaaaacctccactctctagcgtttcatttgtttcttttgaaaatgcaatctctcttcttctctc 9846531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 9846018 - 9846118
Alignment:
Q  39 caagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaaccaagtgttaagatgaatgaatgcaagaagttaagttttac 138  Q
    ||||||||||| || | |||||||||||||| ||||||| | ||||||| ||||| ||| ||||||| |||| ||||  |||||| ||| ||||| ||||    
T  9846018 caagtgttacccatacaataaaccaagtgtcttgactcatgtggaatacgtacaataaatcaagtgtcaagacgaatccatgcaacaagctaagtgttac 9846117  T
Q  139 c 139  Q
    |    
T  9846118 c 9846118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 160
Target Start/End: Original strand, 20806969 - 20807058
Alignment:
Q  71 tgactcacgaggaatacatacaacaaaccaagtgttaagatgaatgaatgcaagaagttaagttttacccatgcaacatatcaagtgtca 160  Q
    ||||||| ||||||||||| ||||||||||| ||| |||| ||||  |||||| |||  || | |||||||||||| | | |||||||||    
T  20806969 tgactcatgaggaatacatgcaacaaaccaaatgtcaagaggaatatatgcaacaaggcaaatgttacccatgcaataaaccaagtgtca 20807058  T

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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 57 - 232
Target Start/End: Original strand, 10982360 - 10982534
Alignment:
Q  57 taaaccaagtgtcgtgactcacgaggaatacatacaacaaaccaagtgttaagatgaatgaatgcaagaagttaagttttacccatgcaacatatcaagt 156  Q
    ||||||||||||| ||||||| |||||||||||| || || |||||||| || ||||||   ||||| || |||||| ||||| || ||||| | ||| |    
T  10982360 taaaccaagtgtcatgactcatgaggaatacatataataagccaagtgtcaaaatgaattt-tgcaacaatttaagtgttaccaattcaacaaaccaaat 10982458  T
Q  157 gtcaagaggagtacatgcaacaaccaaatgttactcatacaataactcaaatgtcatgacgaatgcatgcaacaat 232  Q
    |||||||||| |||||||||||||||||||||||  |   |||||| ||||||||| || ||||||| ||||||||    
T  10982459 gtcaagaggaatacatgcaacaaccaaatgttacctaagtaataacccaaatgtcacgaggaatgcacgcaacaat 10982534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 140 - 252
Target Start/End: Original strand, 43108161 - 43108273
Alignment:
Q  140 catgcaacatatcaagtgtcaagaggagtacatgcaacaaccaaatgttactcatacaataactcaaatgtcatgacgaatgcatgcaacaattcgattg 239  Q
    |||||||||  |||||||||||||  | |||||||| ||| ||| |||||| ||||||||||| ||||||||| || |||||||||||||||  | ||||    
T  43108161 catgcaacaagtcaagtgtcaagaataatacatgcatcaatcaagtgttacccatacaataacccaaatgtcacgaggaatgcatgcaacaacccaattg 43108260  T
Q  240 ttatccatgcagt 252  Q
    ||||||| |||||    
T  43108261 ttatccacgcagt 43108273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 43107898 - 43108040
Alignment:
Q  4 caagacaagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaaccaagt 103  Q
    |||| ||||||||||||| |||||||| | ||  ||| ||||||||  ||| |||||||||||||| ||||||| ||||||||||| |||||| |||| |    
T  43107898 caagtcaagtgtcaagagaaacacatgcagcatgtcaggtgttacccgtgcaataaaccaagtgtcatgactcatgaggaatacatgcaacaagccaaat 43107997  T
Q  104 gttaagatgaatgaatgcaagaagttaagttttacccatgcaa 146  Q
    || |||| ||||   | ||| |||| |||| ||||||||||||    
T  43107998 gtcaagaggaatacttacaataagtcaagtgttacccatgcaa 43108040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 39 - 178
Target Start/End: Complemental strand, 3343164 - 3343025
Alignment:
Q  39 caagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaaccaagtgttaagatgaatgaatgcaagaagttaagttttac 138  Q
    |||||||||| ||||| ||||||||| |||| ||| ||| ||| |||||||||||||| |||||||| || | | | | || ||| || |||||| ||||    
T  3343164 caagtgttacttatgcaataaaccaaatgtcatgattcatgagaaatacatacaacaagccaagtgtcaaaaggtacgcatacaacaatttaagtgttac 3343065  T
Q  139 ccatgcaacatatcaagtgtcaagaggagtacatgcaaca 178  Q
    |||||||||| | ||| ||||||||  | |||||||||||    
T  3343064 ccatgcaacaaaacaattgtcaagaaaaatacatgcaaca 3343025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 39289989 - 39290134
Alignment:
Q  1 caacaagacaagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaacca 100  Q
    ||||||| ||||||||||||| || ||||| | |||  ||| |||||| ||| | || ||||||||||| ||||  | ||||||||||| |||||| |||    
T  39289989 caacaagccaagtgtcaagagaaatacatgcagcaagccaaatgttacttatacaatgaaccaagtgtcatgacatatgaggaatacatgcaacaagcca 39290088  T
Q  101 agtgttaagatgaatgaatgcaagaagttaagttttacccatgcaa 146  Q
    ||||| ||||  |||  |||||| ||||||||| ||| ||||||||    
T  39290089 agtgtcaagagaaatacatgcaacaagttaagtgttatccatgcaa 39290134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 3343896 - 3343751
Alignment:
Q  1 caacaagacaagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaacca 100  Q
    ||||||| ||| |||||||||||| ||||| |  |   ||| ||||| |||| | ||||||||  ||||  || ||| ||||||||||| ||||||||||    
T  3343896 caacaagccaaatgtcaagaggaatacatgcaggaggacaaatgttaactattcaataaaccacatgtcacgaatcaggaggaatacatgcaacaaacca 3343797  T
Q  101 agtgttaagatgaatgaatgcaagaagttaagttttacccatgcaa 146  Q
    ||||| |||||||||  |||||  |||| |||| ||||||||||||    
T  3343796 agtgtcaagatgaatacatgcagcaagtcaagtgttacccatgcaa 3343751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 3343592 - 3343512
Alignment:
Q  9 caagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacat 89  Q
    |||||||||||||||| ||||| | |||  ||| ||||||| |||| ||||||||||||||  |||||| |||||||||||    
T  3343592 caagtgtcaagaggaatacatgcagcaagccaaatgttacccatgcaataaaccaagtgtcacgactcatgaggaatacat 3343512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 43107985 - 43108094
Alignment:
Q  1 caacaagacaagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaacca 100  Q
    ||||||| ||| |||||||||||| || |  || || |||||||||||| |||| ||||      |||||||||||||||| ||||||| |||||| |||    
T  43107985 caacaagccaaatgtcaagaggaatacttacaataagtcaagtgttacccatgcaataat-----tgtcgtgactcacgagaaatacatgcaacaagcca 43108079  T
Q  101 agtgttaagatgaat 115  Q
    |||||||||| ||||    
T  43108080 agtgttaagaggaat 43108094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 3343293 - 3343188
Alignment:
Q  1 caacaagacaagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgat-aaaccaagtgtcgtgactcacgaggaatacatacaacaaacc 99  Q
    ||||||| ||| |||||||||||| ||||  | ||| |||||||||| | ||   || |||||||||||| ||||||| ||  |||||||||||||||||    
T  3343293 caacaagccaaatgtcaagaggaatacatacatcaagtcaagtgttatccattaaataaaaccaagtgtcatgactcatgaacaatacatacaacaaacc 3343194  T
Q  100 aagtgt 105  Q
    ||||||    
T  3343193 aagtgt 3343188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 26561803 - 26561694
Alignment:
Q  1 caacaagacaagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaacca 100  Q
    ||||||| ||| |||||||||||| ||||||| |||  ||||| ||||  |||| ||  |||||||||| || |||| | | ||||||| ||||||||||    
T  26561803 caacaagtcaaatgtcaagaggaatacatgtagcaacccaagtattacacatgcaattgaccaagtgtcatggctcatgtgaaatacatgcaacaaacca 26561704  T
Q  101 agtgttaaga 110  Q
    ||||| ||||    
T  26561703 agtgtcaaga 26561694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 39289949 - 39290008
Alignment:
Q  51 atgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaaccaagtgttaaga 110  Q
    |||| |||||||||||||| ||||||| || ||| ||||||||||| |||||||| ||||    
T  39289949 atgcaataaaccaagtgtcatgactcatgatgaacacatacaacaagccaagtgtcaaga 39290008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 3343798 - 3343732
Alignment:
Q  9 caagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgact 75  Q
    |||||||||||| ||| ||||| | ||| |||||||||||| |||| ||||||||| |||| |||||    
T  3343798 caagtgtcaagatgaatacatgcagcaagtcaagtgttacccatgcaataaaccaaatgtcatgact 3343732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 39290079 - 39290155
Alignment:
Q  1 caacaagacaagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgactca 77  Q
    ||||||| ||||||||||||| || ||||| ||||| | |||||||| | |||| |||||| ||||||  |||||||    
T  39290079 caacaagccaagtgtcaagagaaatacatgcaacaagttaagtgttatccatgcaataaactaagtgtgatgactca 39290155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 141 - 250
Target Start/End: Complemental strand, 10927966 - 10927857
Alignment:
Q  141 atgcaacatatcaagtgtcaagaggagtacatgcaacaaccaaatgttactcatacaataactcaaatgtcatgacgaatgcatgcaacaattcgattgt 240  Q
    |||||||| |||||||||||||| || |||||||| | ||||| |||||| ||| ||||||||||||||| ||||  |||||||||||||| || |||||    
T  10927966 atgcaacaaatcaagtgtcaagaagaatacatgcatcgaccaagtgttacccatgcaataactcaaatgttatgagaaatgcatgcaacaactcaattgt 10927867  T
Q  241 tatccatgca 250  Q
    ||||||||||    
T  10927866 tatccatgca 10927857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 12513175 - 12513072
Alignment:
Q  9 caagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaaccaagtgttaa 108  Q
    |||||||||||||||| ||||| ||||| || ||||||||| |||| |||||||||||||| ||||||   | |||||||| |||||| |||||||| ||    
T  12513175 caagtgtcaagaggaatacatgcaacaagtcgagtgttacccatgcaataaaccaagtgtcatgactc---atgaatacatgcaacaatccaagtgtcaa 12513079  T
Q  109 gatgaat 115  Q
    || ||||    
T  12513078 gaggaat 12513072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12513360 - 12513284
Alignment:
Q  1 caacaagacaagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgactca 77  Q
    |||||||||||||| || |||| ||||||| |||||  ||||||||||| |||| |||||||||||||| |||||||    
T  12513360 caacaagacaagtgacaggagggacacatgcaacaagccaagtgttacccatgcaataaaccaagtgtcatgactca 12513284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 10928045 - 10927939
Alignment:
Q  9 caagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaaccaagtgttaa 108  Q
    ||||||||||||||||  |||| | |||  ||||||||||| |||| ||| | |||||||| ||||||| |||||||| || ||||||| ||||||| ||    
T  10928045 caagtgtcaagaggaatgcatgcaccaagccaagtgttacccatgcaatagatcaagtgtcatgactcatgaggaatatatgcaacaaatcaagtgtcaa 10927946  T
Q  109 gatgaat 115  Q
    || ||||    
T  10927945 gaagaat 10927939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 58 - 160
Target Start/End: Complemental strand, 10928086 - 10927984
Alignment:
Q  58 aaaccaagtgtcgtgactcacgaggaatacatacaacaaaccaagtgttaagatgaatgaatgcaagaagttaagttttacccatgcaacatatcaagtg 157  Q
    |||||||||||| ||||||| ||| ||||||| ||| || |||||||| |||| ||||| |||||  |||  |||| |||||||||||| | ||||||||    
T  10928086 aaaccaagtgtcatgactcaggagaaatacatgcaataagccaagtgtcaagaggaatgcatgcaccaagccaagtgttacccatgcaatagatcaagtg 10927987  T
Q  158 tca 160  Q
    |||    
T  10927986 tca 10927984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 12513236 - 12513114
Alignment:
Q  38 tcaagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaaccaagtgttaagatgaatgaatgcaagaagttaagtttta 137  Q
    |||||||||||  |||| |||||||||||||| ||||| | || |||||||| ||||||  ||||||| |||| ||||  |||||| ||||  ||| |||    
T  12513236 tcaagtgttacacatgcaataaaccaagtgtcatgacttatgaagaatacatgcaacaattcaagtgtcaagaggaatacatgcaacaagtcgagtgtta 12513137  T
Q  138 cccatgcaacatatcaagtgtca 160  Q
    ||||||||| | | |||||||||    
T  12513136 cccatgcaataaaccaagtgtca 12513114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 18960697 - 18960810
Alignment:
Q  1 caacaagacaagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaacca 100  Q
    ||||||| |||||||||||||||| ||||| |  || ||||||||| || |||| ||||| ||| |||| ||| ||| ||||||  |||||||||| |||    
T  18960697 caacaagccaagtgtcaagaggaatacatgcattaagtcaagtgttgcc-atgcaataaatcaattgtcatgattcatgaggaaaccatacaacaagcca 18960795  T
Q  101 agtgttaagatgaat 115  Q
    |||||||||| ||||    
T  18960796 agtgttaagaggaat 18960810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 18960622 - 18960721
Alignment:
Q  16 caagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaaccaagtgttaagatgaat 115  Q
    |||||| || ||||| |||||  ||||||| ||| |||| |||||| || ||||  |||||| ||||||||||| |||||| |||||||| |||| ||||    
T  18960622 caagagaaatacatgcaacaagccaagtgtaacccatgcaataaactaaatgtcacgactcatgaggaatacatgcaacaagccaagtgtcaagaggaat 18960721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 18960518 - 18960585
Alignment:
Q  1 caacaagacaagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtc 69  Q
    ||||||| |||||||||||||||| |||||  | || |||||||| ||| |||| ||||||||||||||    
T  18960518 caacaagtcaagtgtcaagaggaatacatgcga-aagtcaagtgtcacccatgcaataaaccaagtgtc 18960585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 30840290 - 30840226
Alignment:
Q  168 tacatgcaacaaccaaatgttactcatacaataactcaaatgtcatgacg-aatgcatgcaacaa 231  Q
    |||||||||||||||| |||||| ||| | ||||| ||||||||| || | ||||||||||||||    
T  30840290 tacatgcaacaaccaagtgttacccatgccataacccaaatgtcacgaggaaatgcatgcaacaa 30840226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 9321681 - 9321595
Alignment:
Q  15 tcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaaccaa 101  Q
    |||||||||| |||||||||||  ||||||||||| |||| |||||||||||||| ||||||| |||||||||||||||||| ||||    
T  9321681 tcaagaggaatacatgtaacaaaccaagtgttacccatgcaataaaccaagtgtcatgactcatgaggaatacatacaacaagccaa 9321595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 9321590 - 9321499
Alignment:
Q  159 caagaggagtacatgcaacaaccaaatgttactcatacaataactcaaatgtcatgacgaatgcatgcaacaattcgattgttatccatgca 250  Q
    ||||| || |||||||||||||||| |||||| ||| ||||||||||||||||   | |||||| ||||||||    |||||||||||||||    
T  9321590 caagaagaatacatgcaacaaccaagtgttacccatgcaataactcaaatgtctcaaggaatgcttgcaacaacctaattgttatccatgca 9321499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 146
Target Start/End: Complemental strand, 11880009 - 11879865
Alignment:
Q  2 aacaagacaagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaaccaa 101  Q
    |||||| |||||||||||||||| ||||| | |||  ||||||||||| | |  ||||||||| |||| ||| ||| ||||||||||| |||||| ||||    
T  11880009 aacaagtcaagtgtcaagaggaatacatgcatcaagccaagtgttacccaggaaataaaccaaatgtcatgattcatgaggaatacatgcaacaagccaa 11879910  T
Q  102 gtgttaagatgaatgaatgcaagaagttaagttttacccatgcaa 146  Q
    || | ||||||| || |||||| |||| |||| ||||||||||||    
T  11879909 gtatcaagatgattgcatgcaacaagtcaagtgttacccatgcaa 11879865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 140 - 252
Target Start/End: Original strand, 35711692 - 35711804
Alignment:
Q  140 catgcaacatatcaagtgtcaagaggagtacatgcaacaaccaaatgttactcatacaataactcaaatgtcatgacgaatgcatgcaacaattcgattg 239  Q
    ||||||||| | ||||||||||||  | ||| |||||||||| | |||||| ||| ||||||| ||||||||| || |||||||||||||||  | ||||    
T  35711692 catgcaacaaaccaagtgtcaagatcaatacttgcaacaacctagtgttacccatgcaataacccaaatgtcacgaggaatgcatgcaacaagccaattg 35711791  T
Q  240 ttatccatgcagt 252  Q
    |||||||| ||||    
T  35711792 ttatccatccagt 35711804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 422
Target Start/End: Complemental strand, 29939620 - 29939489
Alignment:
Q  295 caataaaacatatctctttaatctgccctcatgaatcccaccctctttcttt-ttcattaactcac-aaaacctccactctctttcatctcattgtttt- 391  Q
    |||||||  ||||||||||  |||||| ||||| |||||| ||| ||| ||| ||||| ||||||| |||||||| |||||||||| ||||||| ||||     
T  29939620 caataaactatatctctttcttctgccatcatgcatcccaacctttttttttcttcatgaactcaccaaaacctctactctctttcttctcatttttttt 29939521  T
Q  392 -cttctgaaaatgacatctcacttcttctctc 422  Q
     ||||| |||||| |||||| |||||||||||    
T  29939520 tcttctaaaaatggcatctctcttcttctctc 29939489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 38179713 - 38179809
Alignment:
Q  156 tgtcaagaggagtacatgcaacaa-ccaaatgttactcatacaataactcaaatgtcatgacgaatgcatgcaacaattcgattgttatccatgcag 251  Q
    ||||||||||| || |||||  || |||| |||||||||| |||||||||||| ||||||| |||||||||||||||  | ||| ||||||||||||    
T  38179713 tgtcaagaggaatatatgcaggaagccaagtgttactcattcaataactcaaacgtcatgaggaatgcatgcaacaacccaatttttatccatgcag 38179809  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 11880047 - 11880128
Alignment:
Q  79 gaggaatacatacaacaaaccaagtgttaagatgaatgaatgcaagaagttaagttttacccatgcaacatatcaagtgtca 160  Q
    ||||||||||| ||||||||||||||| |||||||||| |||||| |||  |||| | |||||||||| | | |||||||||    
T  11880047 gaggaatacatgcaacaaaccaagtgtaaagatgaatgcatgcaacaagacaagtgtaacccatgcaataaaccaagtgtca 11880128  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 18483216 - 18483145
Alignment:
Q  40 aagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaacaaaccaagtgttaagat 111  Q
    |||||||||| |||| | ||| |||||||| ||||| | ||||||||||| ||||||||||||||| |||||    
T  18483216 aagtgttacccatgcaaaaaatcaagtgtcatgacttatgaggaatacatgcaacaaaccaagtgtcaagat 18483145  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 38179620 - 38179705
Alignment:
Q  10 aagtgtcaagaggaacacatgtaacaattcaagtgttacctatgcgataaaccaagtgtcgtgactcacgaggaatacatacaaca 95  Q
    |||||||||||| ||  |||| ||||| | ||||||||   |||| |||||||||||||| ||||||| ||| ||||||| |||||    
T  38179620 aagtgtcaagagtaatgcatgcaacaagttaagtgttatacatgcaataaaccaagtgtcatgactcatgagaaatacatgcaaca 38179705  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 8037658 - 8037736
Alignment:
Q  153 aagtgtcaagaggagtacatgcaacaaccaaatgttactcatacaataactcaaatgtcatgacgaatgcatgcaacaa 231  Q
    |||||||||||  | |||||||||| ||||||||||||||||  |||||  ||||| |||||| |||||||||||||||    
T  8037658 aagtgtcaagaaaaatacatgcaacgaccaaatgttactcatgaaataaaccaaatctcatgaggaatgcatgcaacaa 8037736  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 422
Target Start/End: Complemental strand, 17748136 - 17748009
Alignment:
Q  298 taaaacatatctctttaatctgccctcatgaatcccac-cctctttctttttcattaactcac-aaaacct-ccactctctttcatctcattgttttctt 394  Q
    ||||||||||||||||  ||| ||| |||||||||||  ||||| ||||| |||| ||||| | ||||||| |||||||||||| ||||||| ||||||     
T  17748136 taaaacatatctctttcttcttcccacatgaatcccaaacctctctctttctcatgaactcgccaaaacctgccactctctttcgtctcatttttttctc 17748037  T
Q  395 ctgaaaatgacatctcacttcttctctc 422  Q
    || |||| | ||| || |||||||||||    
T  17748036 ctaaaaagggcatatctcttcttctctc 17748009  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 422
Target Start/End: Complemental strand, 19049456 - 19049329
Alignment:
Q  298 taaaacatatctctttaatctgccctcatgaatcccac-cctctttctttttcattaactcac-aaaacct-ccactctctttcatctcattgttttctt 394  Q
    ||||||||||||||||  ||| ||| |||||||||||  ||||| ||||| |||| ||||| | ||||||| |||||||||||| ||||||| ||||||     
T  19049456 taaaacatatctctttcttcttcccacatgaatcccaaacctctctctttctcatgaactcgccaaaacctgccactctctttcgtctcatttttttctc 19049357  T
Q  395 ctgaaaatgacatctcacttcttctctc 422  Q
    || |||| | ||| || |||||||||||    
T  19049356 ctaaaaagggcatatctcttcttctctc 19049329  T

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