View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11029_low_8 (Length: 428)
Name: NF11029_low_8
Description: NF11029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11029_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 40 - 419
Target Start/End: Original strand, 17379766 - 17380148
Alignment:
| Q |
40 |
ctaaacaaaattaattattccataaaaaattatcagcagactaatataaccaaaaaacaatcaataacgcaagttaacattgtcttctaaggtggagaca |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
17379766 |
ctaaacaaaattaattattccataaaaaattatcatcagactaatataaccaaaaaacaatcaataacgcaagttaacattgtcttctaaggtatagaga |
17379865 |
T |
|
| Q |
140 |
gattaatagtccggtcaagccaaatgctcaaaaccaaaccacataggaaaattaatatttcacacaggtt-aaaatgctgcagattgtcccaaacttcaa |
238 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| |
|
|
| T |
17379866 |
gattaatagtctgatcaagccaaatgctcaaaatcaaaccacataggaaaattaatatttcacacaggttaaaaatgctacagattggcccaaacttcaa |
17379965 |
T |
|
| Q |
239 |
actcttaactttataaagattagtttgacacatcaatgggtagtttatactgnnnnnnnactc--tcttatcttctgagtatttttacaaatcctatttt |
336 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
17379966 |
actcttaactttataaagatttgtttgacacatcaatgggtagtttatgctgtttttttactcgatcttatcttctgagtatttttacaaatcctacttt |
17380065 |
T |
|
| Q |
337 |
gtctttgatcgacaagaaaagaactcaacaacatagagcattgggaatatccttatcatgttctagattgtgtttcatctcat |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17380066 |
gtctttgatcgacaagaaaagaactcaacaacttagagcattgggaatatccatatcatgttctagattgtgtttcatctcat |
17380148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 190
Target Start/End: Original strand, 17395245 - 17395366
Alignment:
| Q |
65 |
aaaattatcagcagactaatataaccaaaaaacaatcaataacgcaagttaacattgtcttctaaggtggagacagattaatagtccggtcaagcc-aaa |
163 |
Q |
| |
|
|||||||| |||| |||||||||| |||| ||||||||||| |||||||||||| | ||||||||||||| |||| |||||||| ||||| || ||| |
|
|
| T |
17395245 |
aaaattattagcaaactaatataatcaaataacaatcaatagcgcaagttaacagtttcttctaaggtgg-gaca----aatagtccagtcaaaccaaaa |
17395339 |
T |
|
| Q |
164 |
tgctcaaaaccaaaccacataggaaaa |
190 |
Q |
| |
|
|| |||||| ||||||||||||||||| |
|
|
| T |
17395340 |
tgttcaaaatcaaaccacataggaaaa |
17395366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 312 - 419
Target Start/End: Original strand, 17377460 - 17377565
Alignment:
| Q |
312 |
tgagtatttttacaaatcctattttgtctttgatcgacaagaaaagaactcaacaa-catagagcattgggaatatccttatcatgttctagattgtgtt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| | || || ||||||| ||||| ||||||||||||| ||||||||| ||| |||||| |
|
|
| T |
17377460 |
tgagtatttttacaaatcctattttgtctcggatcgacaggcgaataattcaacaaccatag---attgggaatatccagatcatgttccagaatgtgtt |
17377556 |
T |
|
| Q |
411 |
tcatctcat |
419 |
Q |
| |
|
|| |||||| |
|
|
| T |
17377557 |
tcgtctcat |
17377565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 412
Target Start/End: Original strand, 17383826 - 17383926
Alignment:
| Q |
313 |
gagtatttttacaaatcctattttgtctttgatcgacaagaaaagaactcaacaa-catagagcattgggaatatccttatcatgttctagattgtgttt |
411 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| |||| | |||| ||| ||| ||||||||||||||||||||| ||||||||| ||| ||||||| |
|
|
| T |
17383826 |
gagtatttttacatatcctattttgtctcggattgacaggcggagaattcagcaagcatagagcattgggaatatccagatcatgttccagaatgtgttt |
17383925 |
T |
|
| Q |
412 |
c |
412 |
Q |
| |
|
| |
|
|
| T |
17383926 |
c |
17383926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 419
Target Start/End: Original strand, 17392578 - 17392643
Alignment:
| Q |
355 |
aagaactcaacaac-atagagcattgggaatatccttatcatgttctagattgtgtttcatctcat |
419 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| ||||||||| ||| |||||||| |||||| |
|
|
| T |
17392578 |
aagaattcaacaaccatagagcattgggaatatccagatcatgttccagaatgtgtttcgtctcat |
17392643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 312 - 419
Target Start/End: Complemental strand, 26052928 - 26052820
Alignment:
| Q |
312 |
tgagtatttttacaaatcctattttgtctttgatcgacaagaaaagaactcaacaac-atagagcattgggaatatccttatcatgttctagattgtgtt |
410 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| |||| || ||| | |||||||| |||||||||||||||||||| ||||||||| ||| |||||| |
|
|
| T |
26052928 |
tgagtatttttacaaatcctattttgtatcggattgacaggagaagtattcaacaaccatagagcattgggaatatccagatcatgttccagaatgtgtt |
26052829 |
T |
|
| Q |
411 |
tcatctcat |
419 |
Q |
| |
|
||||||||| |
|
|
| T |
26052828 |
tcatctcat |
26052820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University