View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1102_low_13 (Length: 273)
Name: NF1102_low_13
Description: NF1102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1102_low_13 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 51 - 244
Target Start/End: Complemental strand, 87553 - 87360
Alignment:
| Q |
51 |
aagacggaattttggagtaagaactgaaattcacaggctcacaagcatgctcggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcat |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87553 |
aagacggaattttggagtaagaactgaaattcacaggctcacaagcatgctcggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcat |
87454 |
T |
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| Q |
151 |
ttgaaccattcctcctgcaacggcatgccatagctgagggtccacactcttgttcacatttttaaatttcttctttgactccatattcatctca |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
87453 |
ttgaaccattcctcctgcaacggcatgccatagctgagggtccacactcttgttcacatttttcaatttcttctttgactccatattcatctca |
87360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 51 - 244
Target Start/End: Complemental strand, 95569 - 95390
Alignment:
| Q |
51 |
aagacggaattttggagtaagaactgaaattcacaggctcacaagcatgctcggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcat |
150 |
Q |
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|||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
95569 |
aagatggaattttggagtaagcactgaaattcaccggctcacaagcatgctcggcgtgaccctgagggaagtaaaagacctgtgagttaacttctggcat |
95470 |
T |
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| Q |
151 |
ttgaaccattcctcctgcaacggcatgccatagctgagggtccacactcttgttcacatttttaaatttcttctttgactccatattcatctca |
244 |
Q |
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| T |
95469 |
ttgcaccattcctcctgcaatggcatg--------------ccacactcttgttcacatttttcaatttcttttttgactccatattcatctca |
95390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 51 - 244
Target Start/End: Original strand, 40878730 - 40878923
Alignment:
| Q |
51 |
aagacggaattttggagtaagaactgaaattcacaggctcacaagcatgctcggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcat |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878730 |
aagacggaattttggagtaagaactgaaattcacaggctcacaagcatgctcggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcat |
40878829 |
T |
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| Q |
151 |
ttgaaccattcctcctgcaacggcatgccatagctgagggtccacactcttgttcacatttttaaatttcttctttgactccatattcatctca |
244 |
Q |
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| T |
40878830 |
ttgaaccattcctcctgcaacggcatgccatagctgagggtccacactcttgttcacatttttcaatttcttctttgactccatattcatctca |
40878923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 51 - 244
Target Start/End: Original strand, 40870713 - 40870892
Alignment:
| Q |
51 |
aagacggaattttggagtaagaactgaaattcacaggctcacaagcatgctcggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcat |
150 |
Q |
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|||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40870713 |
aagatggaattttggagtaagcactgaaattcaccggctcacaagcatgctcggcgtgaccctgagggaagtaaaagacctgtgagttaacttctggcat |
40870812 |
T |
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| Q |
151 |
ttgaaccattcctcctgcaacggcatgccatagctgagggtccacactcttgttcacatttttaaatttcttctttgactccatattcatctca |
244 |
Q |
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||| |||||||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
40870813 |
ttgcaccattcctcctgcaatggcatg--------------ccacactcttgttcacatttttcaatttcttttttgactccatattcatctca |
40870892 |
T |
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