View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1102_low_14 (Length: 268)

Name: NF1102_low_14
Description: NF1102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1102_low_14
NF1102_low_14
[»] chr4 (2 HSPs)
chr4 (89-258)||(40383045-40383213)
chr4 (12-88)||(28110915-28110991)
[»] chr3 (1 HSPs)
chr3 (12-88)||(24837258-24837334)
[»] chr8 (1 HSPs)
chr8 (12-88)||(4028558-4028634)
[»] chr2 (1 HSPs)
chr2 (12-88)||(34326482-34326558)
[»] chr7 (1 HSPs)
chr7 (33-78)||(35052330-35052375)
[»] chr1 (1 HSPs)
chr1 (179-229)||(22793016-22793064)


Alignment Details
Target: chr4 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 89 - 258
Target Start/End: Complemental strand, 40383213 - 40383045
Alignment:
Q  89 agacggagagagtatttgatacatttatatattcnnnnnnntaaattaataatagttatacacaaaaggtacataaaacgatacttcttatgctaaataa 188  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383213 agacggagagagtatttgatacatttatatattcaaaaaaataaattaataatagttatacacaaaaggtacataaaacgatacttcttatgctaaataa 40383114  T
Q  189 caaagatgcttcctatattagtgataacttgaattattaaaccataaacagacgatactccctatgctac 258  Q
     ||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  40383113 -aaagatgcttcctatgttagtgataacttgaattattaaactataaacagatgatactccctatgctac 40383045  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 28110991 - 28110915
Alignment:
Q  12 ggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28110991 ggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc 28110915  T

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Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 24837258 - 24837334
Alignment:
Q  12 ggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24837258 ggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc 24837334  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 4028558 - 4028634
Alignment:
Q  12 ggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc 88  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  4028558 ggctttggtatgctgctgttctgcttttttggctaggagtatatgacggcctcactgctgtcctgcttctttgcacc 4028634  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 34326482 - 34326558
Alignment:
Q  12 ggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc 88  Q
    |||||||||||||||||| |||| | ||| |||||||||||||||||||||||  ||||||||||||||||||||||    
T  34326482 ggctttggtatgctgctgttctgatttttcggctaggagtatatgacagcctcgctgctgtcctgcttctttgcacc 34326558  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 35052375 - 35052330
Alignment:
Q  33 tgctgttttggctaggagtatatgacagcctcattgctgtcctgct 78  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||    
T  35052375 tgctgttttggctacgagtatatgacagcctcattgttgtcctgct 35052330  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 22793064 - 22793016
Alignment:
Q  179 tgctaaataacaaagatgcttcctatattagtgataacttgaattattaaa 229  Q
    |||||||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  22793064 tgctaaataacaaagatgcttcctatgtt--tgaaaacttgaattattaaa 22793016  T

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