View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1102_low_4 (Length: 489)

Name: NF1102_low_4

Description: NF1102

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1102_low_4

[»] chr5 (1 HSPs)

Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 373; E-Value: 0

Query Start/End: Original strand, 97 - 477

Target Start/End: Original strand, 34590804 - 34591184

Alignment:

Q	97	ctctgaactcccaagaggcgaggttaccttttcagcaatcaactgaatttccttcaccctatcctgaactaactttcggagttgctcttcttggcttgtc	196	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34590804	ctctgaactcccaagaggcgaggttaccttttcagcaatcaactgaatttccttcaccctatcctgaactaactttcggagttgctcttcttggcttgtc	34590903	T

Q	197	tgattgtcatccatctgtacagcaatatcttcaccagcccctgatttgaacatgacaaatgacatctcctcattgacatcgcaaggaacttcaataagtt	296	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34590904	tgattgtcatccatctgtacagcaatatcttcaccagcccctgatttgaacatgacaaatgacatctcctcattgacattgcaaggaacttcaataagtt	34591003	T

Q	297	gcttcccagcagtcccagaatctttccccaaaatatcatacttcacacgttcagaaataacgctgacaaagttctccaggtacttgtcaataggattgag	396	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34591004	gcttcccagcagtcccagaatctttccccaaaatatcatacttcacacgttcagaaataacgctgacaaagttctccaggtacttgtcaataggattgag	34591103	T

Q	397	gccaatgtagatcaaaacctcccaacacttgagaaactgtgtcttggtaattttcaaatgtttccttacatccgcaacagc	477	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	34591104	gccaatgtagatcaaaacctcccaacacttgagaaactgtgtcttggtaattttcaaatgtttccttacatcctcaacagc	34591184	T

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