View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11030_high_1 (Length: 711)
Name: NF11030_high_1
Description: NF11030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11030_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 621; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 22 - 704
Target Start/End: Complemental strand, 47075380 - 47074684
Alignment:
| Q |
22 |
tgctgttgagattatcttccgttgttctcacttggataacaaagacattttatctaaaagtgtaaatattcaataccaagctccatcatatccgttttat |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075380 |
tgctgttgagattatcttccgttgttctcacttggataacaaagacattttatctaaaagtgtaaatattcaataccaagctccatcatatccgttttat |
47075281 |
T |
|
| Q |
122 |
ttattacattcttaaaactcatcttgctttttcttgtaggatccttttctaaggatatcaagaattgttgagagtggaggttctgttcctatttgcaaga |
221 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075280 |
ttattacattcttaaaactcatcttgctttttcttgtaggatccttttctaaggatatcaagaattgttgagagtggaggttctgttcctatttgcaaga |
47075181 |
T |
|
| Q |
222 |
ctgaagttaaagacaacaatttaaatccaaaatggagaccactttgtcttaatttccagcagtttggaagtaaagtaagctttccatctttatttgcaac |
321 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075180 |
ctgaagttaaagacaacaatttaaatccaaaatggagaccactttgtcttaatttccagcagtttggaagtaaagtaagctttccatctttatttgcaac |
47075081 |
T |
|
| Q |
322 |
atgtctgatgttacatcatattcatatatagattactctgacannnnnnnaatttctttctctatgcaggataatccgttacttattgagtgttttgatt |
421 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075080 |
atgtctgatgttacatcatattcatatatagattactctgacatttttttaatttctttctctatgcaggataatccgttacttattgagtgttttgatt |
47074981 |
T |
|
| Q |
422 |
tcaatagcagtggaaatcatgtacttatagggtaatgtcaaattatatagctttttgtttagcctaaacttctttaggctttacactttc---------- |
511 |
Q |
| |
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| T |
47074980 |
tcaatagcagtggaaatcatgcacttatagggtaatgtcaaattatatagctttttgtttagcctaaacttctttaggctttacactttctagttcatac |
47074881 |
T |
|
| Q |
512 |
----tagatgcaaaatagtgacatcaatgtttgttggcaacagtaaactgcaaaaatcagtagcagaccttgaaaagctataccaagagagaaaaggcgc |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47074880 |
tttatagatgcaaaatagtgacatcaatgtttgttggcaacagtaaactgcaaaaatcagtagcagaccttgaaaagctataccaagagagaaaaggcgc |
47074781 |
T |
|
| Q |
608 |
aaattttgtcatgcgatcaacacgcaatggacaagagaaggtattcattggtccctgaaatcgaatttgtgttatattttggatttgatctctgctt |
704 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47074780 |
aaattttgtcatgcgatccacacgcaatggacaagagaaggtattcattggtccctgaaatcgaatttgtgttatattttggatttgatctctgctt |
47074684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 149 - 342
Target Start/End: Complemental strand, 47057452 - 47057258
Alignment:
| Q |
149 |
tttttcttgtaggatccttttctaaggatatcaagaattgttgagagtggaggttctgttcctatttgcaagactgaagttaaagacaac-aatttaaat |
247 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
47057452 |
tttttcttgtaggatccttttctaaggatatcaagaatggttgagagtggaggttctgttcctatttgcaagactgaagttatagacaacaaatttaaat |
47057353 |
T |
|
| Q |
248 |
ccaaaatggagaccactttgtcttaatttccagcagtttggaagtaaagtaagctttccatctttatttgcaacatgtctgatgttacatcatat |
342 |
Q |
| |
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|||||||||| |||| |||||||||||||||||||||||||||||| ||||||||| | |||||| |||||||||| |||||| ||||||| |
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| T |
47057352 |
ccaaaatggaaaccagtttgtcttaatttccagcagtttggaagtatagtaagcttgcgatctttgaacacaacatgtctaatgttaaatcatat |
47057258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 47057742 - 47057666
Alignment:
| Q |
22 |
tgctgttgagattatcttccgttgttctcacttggataacaaagacattttatctaaaagtgtaaatattcaatacc |
98 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
47057742 |
tgctgttgagattatcttccgttgttctcgcttggataacaaagacattttttctaaaagtgtacatattcaatacc |
47057666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 524 - 657
Target Start/End: Complemental strand, 47056896 - 47056763
Alignment:
| Q |
524 |
agtgacatcaatgtttgttggcaacagtaaactgcaaaaatcagtagcagaccttgaaaagctataccaagagagaaaaggcgcaaattttgtcatgcga |
623 |
Q |
| |
|
||||||||||| |||||||| || ||||||| |||| ||| || ||||||||||||||||||||| | | ||||||||||| | ||||||||||||| | |
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| T |
47056896 |
agtgacatcaaagtttgttgccatcagtaaaatgcagaaaacaatagcagaccttgaaaagctatgcaatgagagaaaaggtgtgaattttgtcatgcca |
47056797 |
T |
|
| Q |
624 |
tcaacacgcaatggacaagagaaggtattcattg |
657 |
Q |
| |
|
|| | |||||| |||||||||||||| ||||||| |
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| T |
47056796 |
tccaaacgcaaaggacaagagaaggtgttcattg |
47056763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 382 - 468
Target Start/End: Complemental strand, 47057031 - 47056945
Alignment:
| Q |
382 |
tctatgcaggataatccgttacttattgagtgttttgatttcaatagcagtggaaatcatgtacttatagggtaatgtcaaattata |
468 |
Q |
| |
|
||||||||||||| ||| ||| |||| ||||||||||||||||||| ||| || ||||||||||| || |||||||||||||||||| |
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| T |
47057031 |
tctatgcaggatactccattagttatcgagtgttttgatttcaatatcagcggcaatcatgtactaatcgggtaatgtcaaattata |
47056945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 149 - 669
Target Start/End: Original strand, 18230146 - 18230687
Alignment:
| Q |
149 |
tttttcttgtaggatccttttctaaggatatcaagaattgttgagagtggaggttctgttcctatttgcaagactgaagttaaagacaacaatttaaatc |
248 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || | |||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
18230146 |
tttttcttgcaggatccttttctaaggatatcacgagtggttgagagtggaggaactgttcctattttcaagactgaagttatagacaacaatttaaatc |
18230245 |
T |
|
| Q |
249 |
caaaatggagaccactttgtcttaatttccagcagtttggaagtaaagtaagctttccatctttatttgcaacatgtctgatgttacatcatattcatat |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||||||||| ||||||||||| |
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|
| T |
18230246 |
caaaatggagaccactttgtcttaatttccagcagtttggaagtaaagtaagctttcgatctttgtgcacaacatgtccgatgttacaccatattcatat |
18230345 |
T |
|
| Q |
349 |
atagattactctgacannnnnnnaatttctttctctatgcaggataatccgttacttattgagtgttttgatttcaatagcagtggaaatcatgtactta |
448 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
18230346 |
atagattactctgaca-ttttttaatttctttctctatgcaggatactccattgcttattgagtgttttgatttcaatagcagcggcaatcatgtactta |
18230444 |
T |
|
| Q |
449 |
tagggtaatgtcaaattatatag----ctttttgtttagcctaaacttctttaggctttacactttc------------------tagatgcaaaatagt |
526 |
Q |
| |
|
| ||||||||||||||||||| | |||| ||||||||||||| | |||||||||||||||||| ||||||||||||| | |
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| T |
18230445 |
tcgggtaatgtcaaattatattgttttattttcgtttagcctaaacatttttaggctttacactttctagtccatatactatatatagatgcaaaatact |
18230544 |
T |
|
| Q |
527 |
gacatcaatgtttgttggcaacagtaaactgcaaaaatcagtagcagaccttgaaaagctataccaagagagaaaaggcgcaaattttgtcatgcgatca |
626 |
Q |
| |
|
|||||||| |||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||| |
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| T |
18230545 |
gacatcaaagtttgttgccgacagtaaactgaaaaaatcagtagcagaccttgaaaagctataccaagaaaaaaaaggcgcaaattttgtcatgccatcc |
18230644 |
T |
|
| Q |
627 |
acacgcaatggacaagagaaggtattcattggtccctgaaatc |
669 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||| |||| |
|
|
| T |
18230645 |
acacgcaatggacaagagaaggtgttcattgatccctgcaatc |
18230687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 18229985 - 18230076
Alignment:
| Q |
21 |
atgctgttgagattatcttccgttgttctcacttggataacaaagacattttatctaaaagtgtaaatattcaataccaagctccatcatat |
112 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||||||| |||||||||||| |||| |||||||| |
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| T |
18229985 |
atgctgttgatattatcttccgctgctctcacttggataacaaagacattttttctaaaagtgtacatattcaatacctagcttcatcatat |
18230076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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