View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11030_high_4 (Length: 419)
Name: NF11030_high_4
Description: NF11030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11030_high_4 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 161 - 419
Target Start/End: Original strand, 40282645 - 40282901
Alignment:
| Q |
161 |
gcaggtcggtgtttaaaagtcttacattggataagatacactgttaacgtacaaggtctttataagtggcggacagtcctcaccttataagtcggttttc |
260 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40282645 |
gcaggccggtgtttaaaagtcttacattggataagatacactgttaag--acaaggtctttataagtggcggacagtcctcaccttataagtcggttttc |
40282742 |
T |
|
| Q |
261 |
tagaagttgagttagacacaatccaaattcgaagatggtactagagccaacccaaaatccatttcaaggtaaatgaataaaaataagtaagagcatcttt |
360 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40282743 |
taggagttgagttagaccaaatccaaattcgaagatggtactagagccaacccaaaatccatttcaaggtaaatgaataaaaataagtaagagcatcttt |
40282842 |
T |
|
| Q |
361 |
aataaaattgtctcatttctgtgtactttgctgagctctgagagaatatgaacatttca |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40282843 |
aataaaattgtctcatttctgtgtactttgctgagctctgagagaatatgagcatttca |
40282901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 40282534 - 40282565
Alignment:
| Q |
1 |
gtgggatgtgtttaaaatacaaaatattactg |
32 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
40282534 |
gtgggatgtgtttaaaatacaaaatattactg |
40282565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 40282587 - 40282620
Alignment:
| Q |
103 |
atttaaatgtggtccacccaatgatccaaggctc |
136 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
40282587 |
atttaaatgtggtccacccagtgatccaaggctc |
40282620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 27724490 - 27724530
Alignment:
| Q |
219 |
tttataagtggcggacagtcctcaccttataagtcggtttt |
259 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
27724490 |
tttataagtggtggacagtcctcgccttataaatcggtttt |
27724530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 40496987 - 40496947
Alignment:
| Q |
219 |
tttataagtggcggacagtcctcaccttataagtcggtttt |
259 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
40496987 |
tttataagtggcgggcagttctcgccttataagtcggtttt |
40496947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University