View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11030_low_11 (Length: 285)
Name: NF11030_low_11
Description: NF11030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11030_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 4225552 - 4225804
Alignment:
| Q |
16 |
atgaacttatttcttggcctacgttaaattaaatatgtgttaagctagnnnnnnnn--cctttttaaaataaataatgttaacttctccttaaagaagtc |
113 |
Q |
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| T |
4225552 |
atgaacttatttcttggcctacgttaaattaaatatgtgttaagctagaaaaaaaaaacctttttaaaataaataatgttaacttctccttaaagaagtc |
4225651 |
T |
|
| Q |
114 |
aaagtaacttattcaattcagacaaagttttaggacttaattttgagccaccaccatacctttaatttaattcaatcactaatttgctccattgatgatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4225652 |
aaagtaacttattcaattcagacaaagttttaggacttaattttgagccaccaccatacctttaatctaattcaatcactaatttgctccattgatgatt |
4225751 |
T |
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| Q |
214 |
cctttcaaccgaaaaaacgattattctaatatttttaaagagactaaacacat |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4225752 |
cctttcaaccgaaaaaacgattattctaatatttttaaagagactaaacacat |
4225804 |
T |
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