View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11030_low_14 (Length: 255)
Name: NF11030_low_14
Description: NF11030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11030_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 43403330 - 43403554
Alignment:
| Q |
18 |
cttctccttctggaccttctactgatattgatagtccatgaagcaacaagtttttgcaccatgtgatggttatcaaacggcaatgatcagctacctttgt |
117 |
Q |
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| T |
43403330 |
cttctccttctggaccttctactgatattgatagtccatgaagcaacaagtttttgcaccatgtgatggttatcaaacggcaatgatcagctacctttgt |
43403429 |
T |
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| Q |
118 |
tctgtatactgacatgtatacactctgaccggaacgtgtcacaccgcctccatgatcatctgttagcttatctgctggtgaaaagcatgtaggaatacca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43403430 |
tctgtatactgacatgtatacactctgaccggaacgtgtcacaccgcctccatgatcatcggttagcttatctgctggtgaaaagcatgtaggaatacca |
43403529 |
T |
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| Q |
218 |
attgagtcttgcatcgtcgtgatct |
242 |
Q |
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| T |
43403530 |
attgagtcttgcatcgtcgtgatct |
43403554 |
T |
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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 34432435 - 34432517
Alignment:
| Q |
53 |
ccatgaagcaacaagtttttgcaccatgtgatggttatcaaacggcaatgatcagctacctttgttctgtatactgacatgta |
135 |
Q |
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| T |
34432435 |
ccatgaagcatcaagtttttgcaccatgtgattgtgatcaaacggcagtgaccagctaactttgttctgtatactgacatgta |
34432517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 26100166 - 26100084
Alignment:
| Q |
53 |
ccatgaagcaacaagtttttgcaccatgtgatggttatcaaacggcaatgatcagctacctttgttctgtatactgacatgta |
135 |
Q |
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| T |
26100166 |
ccatgaagaagcaagttttcgcactatgtgattgtaatcaaacgagagtgatcatctaccattcttctgtatactgacatgta |
26100084 |
T |
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