View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11030_low_15 (Length: 245)

Name: NF11030_low_15
Description: NF11030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11030_low_15
NF11030_low_15
[»] chr5 (11 HSPs)
chr5 (119-230)||(18564761-18564872)
chr5 (5-118)||(6828766-6828878)
chr5 (1-119)||(40410587-40410704)
chr5 (1-70)||(17518473-17518542)
chr5 (1-70)||(10571156-10571225)
chr5 (33-69)||(1152253-1152289)
chr5 (33-69)||(1461288-1461324)
chr5 (33-69)||(4240602-4240638)
chr5 (33-69)||(7947723-7947759)
chr5 (33-69)||(22746317-22746353)
chr5 (33-69)||(40013852-40013888)
[»] chr1 (23 HSPs)
chr1 (1-117)||(1928374-1928489)
chr1 (1-118)||(36402245-36402361)
chr1 (1-117)||(10896799-10896914)
chr1 (1-122)||(9831293-9831413)
chr1 (1-114)||(29208757-29208869)
chr1 (1-121)||(33243280-33243399)
chr1 (1-121)||(33263453-33263572)
chr1 (1-118)||(45318458-45318574)
chr1 (1-117)||(26882796-26882911)
chr1 (1-116)||(52705393-52705507)
chr1 (79-121)||(48194585-48194627)
chr1 (79-121)||(48203343-48203385)
chr1 (79-116)||(19007626-19007663)
chr1 (79-116)||(19893451-19893488)
chr1 (92-121)||(28038330-28038359)
chr1 (33-69)||(5495247-5495283)
chr1 (33-69)||(6312587-6312623)
chr1 (33-69)||(18798504-18798540)
chr1 (33-69)||(28387544-28387580)
chr1 (33-69)||(29396539-29396575)
chr1 (33-69)||(46328055-46328091)
chr1 (33-69)||(49230899-49230935)
chr1 (33-69)||(51701593-51701629)
[»] chr7 (28 HSPs)
chr7 (1-118)||(40097092-40097208)
chr7 (1-115)||(39301215-39301329)
chr7 (1-118)||(151856-151972)
chr7 (1-118)||(27418612-27418728)
chr7 (1-70)||(35090076-35090145)
chr7 (1-118)||(47915027-47915143)
chr7 (1-105)||(43057651-43057754)
chr7 (1-112)||(30110807-30110917)
chr7 (83-121)||(33474513-33474551)
chr7 (83-119)||(12253442-12253478)
chr7 (80-119)||(43057836-43057875)
chr7 (81-115)||(5572603-5572637)
chr7 (1-58)||(12253361-12253418)
chr7 (32-69)||(29585529-29585566)
chr7 (33-70)||(46405581-46405618)
chr7 (33-69)||(509670-509706)
chr7 (33-69)||(3797207-3797243)
chr7 (33-69)||(7993156-7993192)
chr7 (33-69)||(8675347-8675383)
chr7 (33-69)||(9882386-9882422)
chr7 (33-69)||(18838403-18838439)
chr7 (33-69)||(23101312-23101348)
chr7 (33-69)||(29614914-29614950)
chr7 (33-69)||(33382651-33382687)
chr7 (33-69)||(33892400-33892436)
chr7 (33-69)||(37327941-37327977)
chr7 (33-69)||(39784113-39784149)
chr7 (33-69)||(44122050-44122086)
[»] chr2 (22 HSPs)
chr2 (1-122)||(20157727-20157847)
chr2 (5-118)||(11534833-11534945)
chr2 (1-118)||(34028903-34029019)
chr2 (1-120)||(11998387-11998505)
chr2 (1-116)||(29940945-29941059)
chr2 (1-70)||(24193456-24193525)
chr2 (1-70)||(24193594-24193663)
chr2 (1-70)||(45546976-45547045)
chr2 (1-51)||(45485425-45485475)
chr2 (1-121)||(6289471-6289588)
chr2 (83-121)||(21736656-21736694)
chr2 (79-116)||(25343220-25343257)
chr2 (79-122)||(14920628-14920671)
chr2 (1-58)||(35172609-35172666)
chr2 (33-69)||(3574868-3574904)
chr2 (79-115)||(3858233-3858269)
chr2 (33-69)||(7026625-7026661)
chr2 (33-69)||(18177288-18177324)
chr2 (33-69)||(26788805-26788841)
chr2 (33-69)||(28740436-28740472)
chr2 (33-69)||(28844576-28844612)
chr2 (33-69)||(33135644-33135680)
[»] chr3 (38 HSPs)
chr3 (1-121)||(27593147-27593266)
chr3 (1-117)||(36785970-36786085)
chr3 (1-117)||(39338267-39338383)
chr3 (1-119)||(19552118-19552235)
chr3 (1-118)||(52024169-52024286)
chr3 (1-118)||(36054977-36055093)
chr3 (1-119)||(26555811-26555928)
chr3 (1-119)||(30588836-30588953)
chr3 (1-115)||(35730933-35731046)
chr3 (1-114)||(26293537-26293649)
chr3 (1-117)||(24150802-24150917)
chr3 (1-116)||(50900417-50900531)
chr3 (1-122)||(26005953-26006073)
chr3 (1-117)||(53184043-53184158)
chr3 (1-70)||(38629770-38629839)
chr3 (1-118)||(13662546-13662662)
chr3 (1-116)||(38682426-38682539)
chr3 (1-121)||(46252173-46252292)
chr3 (79-117)||(45926996-45927034)
chr3 (2-69)||(26107280-26107347)
chr3 (79-121)||(43151154-43151196)
chr3 (79-116)||(10067731-10067768)
chr3 (83-119)||(85745-85781)
chr3 (33-69)||(10660554-10660590)
chr3 (33-69)||(10728792-10728828)
chr3 (33-69)||(11431545-11431581)
chr3 (33-69)||(15493011-15493047)
chr3 (33-69)||(17946307-17946343)
chr3 (33-69)||(18749589-18749625)
chr3 (33-69)||(23753537-23753573)
chr3 (33-69)||(34484181-34484217)
chr3 (33-69)||(36674281-36674317)
chr3 (33-69)||(39038059-39038095)
chr3 (33-69)||(40897163-40897199)
chr3 (33-69)||(44906664-44906700)
chr3 (33-69)||(50903394-50903430)
chr3 (33-69)||(52618116-52618152)
chr3 (33-69)||(54628862-54628898)
[»] chr4 (26 HSPs)
chr4 (1-118)||(40143774-40143890)
chr4 (1-121)||(45332661-45332780)
chr4 (1-114)||(26336079-26336191)
chr4 (1-117)||(54509713-54509828)
chr4 (1-122)||(42720713-42720833)
chr4 (1-115)||(47685145-47685258)
chr4 (1-117)||(8583975-8584090)
chr4 (1-121)||(25935781-25935901)
chr4 (1-121)||(44929872-44929991)
chr4 (1-70)||(52109451-52109520)
chr4 (1-118)||(3435927-3436038)
chr4 (1-121)||(7820091-7820210)
chr4 (1-38)||(45340433-45340470)
chr4 (79-121)||(28847149-28847191)
chr4 (79-117)||(41761978-41762016)
chr4 (1-118)||(8880442-8880558)
chr4 (83-119)||(56397440-56397476)
chr4 (79-117)||(35261614-35261652)
chr4 (81-118)||(42218453-42218490)
chr4 (33-69)||(5441423-5441459)
chr4 (33-69)||(23987233-23987269)
chr4 (33-69)||(27768075-27768111)
chr4 (33-69)||(29649818-29649854)
chr4 (33-69)||(37915846-37915882)
chr4 (33-69)||(51320940-51320976)
chr4 (33-69)||(54341163-54341199)
[»] chr8 (30 HSPs)
chr8 (1-119)||(30382644-30382761)
chr8 (1-119)||(37567333-37567450)
chr8 (1-117)||(9209035-9209150)
chr8 (1-70)||(4302778-4302847)
chr8 (1-122)||(1605983-1606103)
chr8 (1-121)||(29260246-29260365)
chr8 (1-120)||(42274968-42275086)
chr8 (1-117)||(35142041-35142156)
chr8 (1-116)||(2112791-2112905)
chr8 (1-117)||(43605334-43605449)
chr8 (1-118)||(40265251-40265367)
chr8 (1-117)||(41386840-41386956)
chr8 (3-118)||(9457541-9457655)
chr8 (1-116)||(28619843-28619957)
chr8 (1-119)||(4655044-4655161)
chr8 (1-119)||(10802741-10802858)
chr8 (1-70)||(8502676-8502746)
chr8 (5-117)||(40013446-40013555)
chr8 (2-69)||(4031377-4031444)
chr8 (33-69)||(7466355-7466391)
chr8 (33-69)||(14782285-14782321)
chr8 (33-69)||(16362216-16362252)
chr8 (33-69)||(18306111-18306147)
chr8 (33-69)||(18958877-18958913)
chr8 (33-69)||(19718031-19718067)
chr8 (33-69)||(31623715-31623751)
chr8 (33-69)||(32497545-32497581)
chr8 (33-69)||(39467618-39467654)
chr8 (33-69)||(42305935-42305971)
chr8 (33-69)||(44725960-44725996)
[»] chr6 (9 HSPs)
chr6 (1-118)||(30877850-30877966)
chr6 (1-117)||(10643984-10644099)
chr6 (1-118)||(29834255-29834371)
chr6 (1-118)||(29865689-29865805)
chr6 (1-116)||(7858344-7858457)
chr6 (1-70)||(3110255-3110324)
chr6 (1-119)||(6476683-6476800)
chr6 (79-121)||(5957121-5957163)
chr6 (33-69)||(34773428-34773464)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-118)||(81752-81868)
[»] scaffold0153 (1 HSPs)
scaffold0153 (9-119)||(34780-34889)
[»] scaffold0237 (1 HSPs)
scaffold0237 (1-118)||(21383-21499)
[»] scaffold0922 (1 HSPs)
scaffold0922 (33-69)||(4220-4256)
[»] scaffold0202 (1 HSPs)
scaffold0202 (1-70)||(16512-16583)


Alignment Details
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 119 - 230
Target Start/End: Original strand, 18564761 - 18564872
Alignment:
Q  119 taatcaatcatccaaagataagggattcaatagacgactacaacaacaacaataagacagattctcagatcataaatacatggaagaattctttcaagta 218  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18564761 taatcaatcatccaaagataagggattgaatagacgactacaacaacaacaataagacagattctcagatcataaatacatggaagaattctttcaagta 18564860  T
Q  219 aatggttgttta 230  Q
    ||||||||||||    
T  18564861 aatggttgttta 18564872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 6828766 - 6828878
Alignment:
Q  5 aataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatctcaa 104  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||        |||||||||||||||| |||||||||    
T  6828766 aataccacaagaatgttttagattccttaaaggtcttgattgaatacccaaagacttttttaaaac-aaaaaagtcttttaaaatcctttgaaatctcaa 6828864  T
Q  105 ttcaatacaccccc 118  Q
    || |||||||||||    
T  6828865 ttgaatacaccccc 6828878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 40410704 - 40410587
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||||||||  ||||||||| ||||||        ||||||||||||| || |||||    
T  40410704 attgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaac-aaaaaagtcttttaaaatccattgaaatc 40410606  T
Q  101 tcaattcaatacaccccct 119  Q
    ||||| |||||||||||||    
T  40410605 tcaatccaatacaccccct 40410587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 17518542 - 17518473
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaac 70  Q
    |||||||| ||||||||||||||| ||||||||||| | |||||||||||||  ||||||||||||||||    
T  17518542 attgaatagcacaagaatgttttacattccttaaaaatcttgattgaataccacaagacttttttaaaac 17518473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 10571225 - 10571156
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaac 70  Q
    |||||||||||||||||||||||| ||||||||||| | ||||||||||| |  ||||||||| ||||||    
T  10571225 attgaataccacaagaatgttttacattccttaaaaattttgattgaatatcacaagacttttataaaac 10571156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 1152253 - 1152289
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  1152253 aaaagtcttgattgaatacctcaagacttttttaaaa 1152289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 1461288 - 1461324
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  1461288 aaaagtcttgattgaatacctcaagacttttttaaaa 1461324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 4240602 - 4240638
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  4240602 aaaagtcttgattgaatacctcaagacttttttaaaa 4240638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 7947723 - 7947759
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  7947723 aaaagtcttgattgaatacctcaagacttttttaaaa 7947759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 22746353 - 22746317
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  22746353 aaaagttttgattgaatacctcaagacttttttaaaa 22746317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 40013852 - 40013888
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  40013852 aaaagtcttgattgaatacctcaagacttttttaaaa 40013888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 1928374 - 1928489
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  1928374 attgaataccacaagaatgttttagattccttaaaagtcttgattgaatacctaaagacttttttaaaac-aaaaaagtcttttaaaatcctttaaaatc 1928472  T
Q  101 tcaattcaatacacccc 117  Q
    |||||| ||||||||||    
T  1928473 tcaattgaatacacccc 1928489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 36402361 - 36402245
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||||| |||||    
T  36402361 attgaataccacaagaatgttttagattccttaaaagtcttgattgaatacctaaagacttttttaaaac-aaaaaagtcttttaaaatcctttgaaatc 36402263  T
Q  101 tcaattcaatacaccccc 118  Q
    |||||| |||||||||||    
T  36402262 tcaattgaatacaccccc 36402245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 10896914 - 10896799
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||         |||||||||||||||| |||||    
T  10896914 attgaataccacaagaatgttttagattccttaaaagtcttgattgaatacctaaagacttttttaaaa-taaaaaaatcttttaaaatcctttgaaatc 10896816  T
Q  101 tcaattcaatacacccc 117  Q
    |||||| ||||||||||    
T  10896815 tcaattgaatacacccc 10896799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 9831413 - 9831293
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    ||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||        |||||||||||||||| |||||    
T  9831413 attgaatactacaagaatgttttagattccttacaagttttgattgaatacctaaagacttttttaaaac-aaaaaagtcttttaaaatcctttgaaatc 9831315  T
Q  101 tcaattcaatacaccccctaat 122  Q
    |||||| ||||||||| |||||    
T  9831314 tcaattgaatacaccctctaat 9831293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 29208869 - 29208757
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||        |||||||||||||||| |||||    
T  29208869 attgaataccaccagaatgttttagattccttaaaagtcttgattgaatacctaaagacatttttaaaac-aaaaaagtcttttaaaatcctttgaaatc 29208771  T
Q  101 tcaattcaatacac 114  Q
    |||||| |||||||    
T  29208770 tcaattgaatacac 29208757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 33243280 - 33243399
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||        |||||||||||| ||| ||||     
T  33243280 attgaataccacaagaatattttagattccttaaaagtcttgattgaatacctaaaaacttttttaaaac-aaaaaagtcttttaaaatcttttgaaatt 33243378  T
Q  101 tcaattcaatacaccccctaa 121  Q
    |||||| |||||| |||||||    
T  33243379 tcaattgaatacatcccctaa 33243399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 33263453 - 33263572
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||        |||||||||||| ||| ||||     
T  33263453 attgaataccacaagaatattttagattccttaaaagtcttgattgaatacctaaaaacttttttaaaac-aaaaaagtcttttaaaatcttttgaaatt 33263551  T
Q  101 tcaattcaatacaccccctaa 121  Q
    |||||| |||||| |||||||    
T  33263552 tcaattgaatacatcccctaa 33263572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 45318574 - 45318458
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||| ||||||||| ||||||||||| | |||||||||||||  ||||||||| ||||||        |||||||||||||||| |||||    
T  45318574 attgaataccacaataatgttttacattccttaaaaatcttgattgaataccagaagacttttataaaac-aaaaaagtcttttaaaatcctttgaaatc 45318476  T
Q  101 tcaattcaatacaccccc 118  Q
    ||||| ||||||||||||    
T  45318475 tcaatccaatacaccccc 45318458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 26882796 - 26882911
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||||||||||| | ||||||||||| |  ||||||||| ||||||        |||||||||||||||| |||||    
T  26882796 attgaataccacaagaatgttttacattccttaaaaatcttgattgaataacacaagacttttataaaac-aaaaaagtcttttaaaatcctttgaaatc 26882894  T
Q  101 tcaattcaatacacccc 117  Q
    ||||| |||||||||||    
T  26882895 tcaatccaatacacccc 26882911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 52705507 - 52705393
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||||||||  ||||||||| ||||||        |||||||||||| ||| |||||    
T  52705507 attgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaac-aaaaaaatcttttaaaatcttttgaaatc 52705409  T
Q  101 tcaattcaatacaccc 116  Q
    |||||| |||||||||    
T  52705408 tcaattgaatacaccc 52705393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 48194627 - 48194585
Alignment:
Q  79 tcttttaaaatcctttaaaatctcaattcaatacaccccctaa 121  Q
    ||||||||||||| || ||||| ||||||||||||||||||||    
T  48194627 tcttttaaaatcccttgaaatcccaattcaatacaccccctaa 48194585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 48203385 - 48203343
Alignment:
Q  79 tcttttaaaatcctttaaaatctcaattcaatacaccccctaa 121  Q
    ||||||||||||| || ||||| ||||||||||||||||||||    
T  48203385 tcttttaaaatcccttgaaatcccaattcaatacaccccctaa 48203343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 19007626 - 19007663
Alignment:
Q  79 tcttttaaaatcctttaaaatctcaattcaatacaccc 116  Q
    ||||||||||||| || |||||||||||||||||||||    
T  19007626 tcttttaaaatcccttgaaatctcaattcaatacaccc 19007663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 19893488 - 19893451
Alignment:
Q  79 tcttttaaaatcctttaaaatctcaattcaatacaccc 116  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  19893488 tcttttaaaatcccttaaaatcttaattcaatacaccc 19893451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 28038359 - 28038330
Alignment:
Q  92 tttaaaatctcaattcaatacaccccctaa 121  Q
    ||||||||||||||||||||||||||||||    
T  28038359 tttaaaatctcaattcaatacaccccctaa 28038330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 5495247 - 5495283
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  5495247 aaaagtcttgattgaatacctcaagacttttttaaaa 5495283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 6312623 - 6312587
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  6312623 aaaagtcttgattgaatacctcaagacttttttaaaa 6312587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 18798540 - 18798504
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  18798540 aaaagtcttgattgaatacctcaagacttttttaaaa 18798504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 28387544 - 28387580
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  28387544 aaaagtcttgattgaatacctcaagacttttttaaaa 28387580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 29396539 - 29396575
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  29396539 aaaagtcttgattgaatacctcaagacttttttaaaa 29396575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 46328091 - 46328055
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  46328091 aaaagtcttgattgaatacctcaagacttttttaaaa 46328055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 49230935 - 49230899
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  49230935 aaaagtcttgattgaatacctcaagacttttttaaaa 49230899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 51701629 - 51701593
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  51701629 aaaagtcttgattgaatacctcaagacttttttaaaa 51701593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 40097208 - 40097092
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||||| |||||    
T  40097208 attgaataccacaagaatgttttagattccttaaaagtcttgattgaatacctaaagacttttttaaaac-aaaaaagtcttttaaaatcctttgaaatc 40097110  T
Q  101 tcaattcaatacaccccc 118  Q
    |||||| |||||||||||    
T  40097109 tcaattgaatacaccccc 40097092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 39301215 - 39301329
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||        |||||||||||| ||| |||||    
T  39301215 attgaataccacaagaatgttttagattccttaaaagtcttgattaaatacctaaagacttttttaaaacaaaaaaagtcttttaaaatcttttgaaatc 39301314  T
Q  101 tcaattcaatacacc 115  Q
    |||||| ||||||||    
T  39301315 tcaattgaatacacc 39301329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 151972 - 151856
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||||||||||| | ||||||||||| |  ||||||||| ||||||        |||||||||||||||| |||||    
T  151972 attgaataccacaagaatgttttacattccttaaaaatcttgattgaatatcacaagacttttataaaac-aaaaaagtcttttaaaatcctttgaaatc 151874  T
Q  101 tcaattcaatacaccccc 118  Q
    ||||| ||||||||||||    
T  151873 tcaatccaatacaccccc 151856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 27418612 - 27418728
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||||||||  ||||||||| ||||||        |||||||||||||||| |||||    
T  27418612 attgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaac-aaaaaagtcttttaaaatcctttgaaatc 27418710  T
Q  101 tcaattcaatacaccccc 118  Q
    ||||| || |||||||||    
T  27418711 tcaatccagtacaccccc 27418728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 35090076 - 35090145
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaac 70  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||||||||  ||||||||| ||||||    
T  35090076 attgaataccacaagaatgttttatattccttaaaaattttgattgaataccacaagacttttataaaac 35090145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 47915027 - 47915143
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||||||| ||| | || ||||||||||  ||||||||| ||||||        |||||||||||||| | |||||    
T  47915027 attgaataccacaagaatgttttacattccttcaaaatcttaattgaataccacaagacttttataaaac-aaaaaagtcttttaaaatcctatgaaatc 47915125  T
Q  101 tcaattcaatacaccccc 118  Q
    ||||| ||||||||||||    
T  47915126 tcaatccaatacaccccc 47915143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 43057651 - 43057754
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||||||||||| |||| || ||||| |  ||||||||| ||||||        |||||||||||||||| |||||    
T  43057651 attgaataccacaagaatgttttacattccttaaaaatattaatagaataacacaagacttttataaaac-aaaaaagtcttttaaaatcctttgaaatc 43057749  T
Q  101 tcaat 105  Q
    |||||    
T  43057750 tcaat 43057754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 30110917 - 30110807
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||||||||||| | || |||||||||   ||||||||| ||||||        ||||||||||| |||| |||||    
T  30110917 attgaataccacaagaatgttttacattccttaaaaatcttaattgaatactacaagacttttataaaac-aaaaaagtcttttaaaattctttgaaatc 30110819  T
Q  101 tcaattcaatac 112  Q
    ||||| ||||||    
T  30110818 tcaatccaatac 30110807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 33474551 - 33474513
Alignment:
Q  83 ttaaaatcctttaaaatctcaattcaatacaccccctaa 121  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  33474551 ttaaaatcctttgaaatctcaattcaatacaccccctaa 33474513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 12253442 - 12253478
Alignment:
Q  83 ttaaaatcctttaaaatctcaattcaatacaccccct 119  Q
    |||||||||||| ||||||||||||||||||||||||    
T  12253442 ttaaaatcctttgaaatctcaattcaatacaccccct 12253478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 43057836 - 43057875
Alignment:
Q  80 cttttaaaatcctttaaaatctcaattcaatacaccccct 119  Q
    ||||||||||||||| |||||||||| |||||||||||||    
T  43057836 cttttaaaatcctttgaaatctcaatccaatacaccccct 43057875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 115
Target Start/End: Original strand, 5572603 - 5572637
Alignment:
Q  81 ttttaaaatcctttaaaatctcaattcaatacacc 115  Q
    ||||||||||| |||||||||||||||||||||||    
T  5572603 ttttaaaatccattaaaatctcaattcaatacacc 5572637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12253361 - 12253418
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaaga 58  Q
    ||||||||||| |||| |  |||||||||| ||||||| |||||| ||||||||||||    
T  12253361 attgaataccataagatttatttagattccataaaagtcttgattcaatacctaaaga 12253418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 29585566 - 29585529
Alignment:
Q  32 taaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  29585566 taaaagttttgattgaatacctcaagacttttttaaaa 29585529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 46405581 - 46405618
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaac 70  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  46405581 aaaagtcttgattgaatacctcaagacttttttaaaac 46405618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 509706 - 509670
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  509706 aaaagtcttgattgaatacctcaagacttttttaaaa 509670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 3797207 - 3797243
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  3797207 aaaagtcttgattgaatacctcaagacttttttaaaa 3797243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 7993192 - 7993156
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  7993192 aaaagttttgattgaatacctcaagacttttttaaaa 7993156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 8675383 - 8675347
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  8675383 aaaagtcttgattgaatacctcaagacttttttaaaa 8675347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 9882386 - 9882422
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  9882386 aaaagtcttgattgaatacctcaagacttttttaaaa 9882422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 18838439 - 18838403
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  18838439 aaaagtcttgattgaatacctcaagacttttttaaaa 18838403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 23101348 - 23101312
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  23101348 aaaagtcttgattgaatacctcaagacttttttaaaa 23101312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 29614914 - 29614950
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  29614914 aaaagtcttgattgaatacctcaagacttttttaaaa 29614950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 33382687 - 33382651
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  33382687 aaaagtcttgattgaatacctcaagacttttttaaaa 33382651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 33892400 - 33892436
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  33892400 aaaagtcttgattgaatacctcaagacttttttaaaa 33892436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 37327977 - 37327941
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  37327977 aaaagtcttgattgaatacctcaagacttttttaaaa 37327941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 39784149 - 39784113
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  39784149 aaaagtcttgattgaatacctcaagacttttttaaaa 39784113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 44122050 - 44122086
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  44122050 aaaagtcttgattgaatacctcaagacttttttaaaa 44122086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 20157727 - 20157847
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||        |||||||||||||||| |||||    
T  20157727 attgaataccacaagaatgttttagattccttaaaagtcttgattgaatacctaaagacttctttaaaac-aaaaaagtcttttaaaatcctttgaaatc 20157825  T
Q  101 tcaattcaatacaccccctaat 122  Q
    |||||| |||||||||||||||    
T  20157826 tcaattgaatacaccccctaat 20157847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 11534945 - 11534833
Alignment:
Q  5 aataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatctcaa 104  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||||| |||||||||    
T  11534945 aataccacaagaatgttttagattccttaaaagtcttgattgaatacctaaagacttttttaaaac-aaaaaagtcttttaaaatcctttgaaatctcaa 11534847  T
Q  105 ttcaatacaccccc 118  Q
    || |||||||||||    
T  11534846 ttgaatacaccccc 11534833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 34028903 - 34029019
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||||| ||||     
T  34028903 attgaataccacaagaatgttttagattccttaaaagtcttgattgaatacctaaagacttttttaaaac-aaaaaagtcttttaaaatcctttgaaata 34029001  T
Q  101 tcaattcaatacaccccc 118  Q
    ||| || |||||||||||    
T  34029002 tcagttgaatacaccccc 34029019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 11998387 - 11998505
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||        |||||||||||||||| |||||    
T  11998387 attgaatacgacaagaatgttttagattccttaaaagtcttgattgaatacctaaaaacatttttaaaac-aaaaaagtcttttaaaatcctttgaaatc 11998485  T
Q  101 tcaattcaatacacccccta 120  Q
    |||||| |||| ||||||||    
T  11998486 tcaattgaatatacccccta 11998505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 29941059 - 29940945
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||||||||  ||||||||| ||||||        |||||||||||||||| |||||    
T  29941059 attgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaac-aaaaaagtcttttaaaatcctttgaaatc 29940961  T
Q  101 tcaattcaatacaccc 116  Q
    ||||| ||||||||||    
T  29940960 tcaatccaatacaccc 29940945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 24193456 - 24193525
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaac 70  Q
    |||||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||| |||||||||||||    
T  24193456 attgaatatcacaagaatgttttagatttcttaaaagtcttgtttgaatacctaaaaacttttttaaaac 24193525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 24193663 - 24193594
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaac 70  Q
    |||||||||||||| ||||||||| ||||||||||| | |||||||||||||  ||||||||||||||||    
T  24193663 attgaataccacaaaaatgttttatattccttaaaaatcttgattgaataccccaagacttttttaaaac 24193594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45547045 - 45546976
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaac 70  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||||||||  ||||||||| ||||||    
T  45547045 attgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaac 45546976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 45485475 - 45485425
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatac 51  Q
    |||||||||||||||||||||||| ||||||||||| | ||||||||||||    
T  45485475 attgaataccacaagaatgttttacattccttaaaaatcttgattgaatac 45485425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 6289471 - 6289588
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||||||||||| | |  |||||||| |  || |||||| ||||||        | |||||||||||||| |||||    
T  6289471 attgaataccacaagaatgttttacattccttaaaaatct--attgaatatcacaaaacttttataaaacaaaaaagtt-ttttaaaatcctttgaaatc 6289567  T
Q  101 tcaattcaatacaccccctaa 121  Q
    ||||| |||||||||||||||    
T  6289568 tcaatccaatacaccccctaa 6289588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 21736656 - 21736694
Alignment:
Q  83 ttaaaatcctttaaaatctcaattcaatacaccccctaa 121  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  21736656 ttaaaatcctttgaaatctcaattcaatacaccccctaa 21736694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 25343257 - 25343220
Alignment:
Q  79 tcttttaaaatcctttaaaatctcaattcaatacaccc 116  Q
    |||||||||||||||||||||||||||| |||||||||    
T  25343257 tcttttaaaatcctttaaaatctcaattgaatacaccc 25343220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 14920628 - 14920671
Alignment:
Q  79 tcttttaaaatcctttaaaatctcaattcaatacaccccctaat 122  Q
    |||||||||||||||||||||| |||| ||||||||||| ||||    
T  14920628 tcttttaaaatcctttaaaatcacaatccaatacaccccgtaat 14920671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 35172609 - 35172666
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaaga 58  Q
    |||||||||||||||| |  |||||||||| ||||||| |||||| ||||||| ||||    
T  35172609 attgaataccacaagatttatttagattccataaaagtcttgattcaatacctcaaga 35172666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 3574904 - 3574868
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  3574904 aaaagtcttgattgaatacctcaagacttttttaaaa 3574868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 3858233 - 3858269
Alignment:
Q  79 tcttttaaaatcctttaaaatctcaattcaatacacc 115  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  3858233 tcttttaaaatcccttaaaatcttaattcaatacacc 3858269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 7026661 - 7026625
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  7026661 aaaagtcttgattgaatacctcaagacttttttaaaa 7026625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 18177324 - 18177288
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  18177324 aaaagtcttgattgaatacctcaagacttttttaaaa 18177288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 26788841 - 26788805
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  26788841 aaaagtcttgattgaatacctcaagacttttttaaaa 26788805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 28740436 - 28740472
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  28740436 aaaagtcttgattgaatacctcaagacttttttaaaa 28740472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 28844612 - 28844576
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  28844612 aaaagtcttgattgaatacctcaagacttttttaaaa 28844576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 33135680 - 33135644
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  33135680 aaaagtcttgattgaatacctcaagacttttttaaaa 33135644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 27593266 - 27593147
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||||| |||||    
T  27593266 attgaataccacaagaatgttttagattccttaaaagtcttgattgaatacctaaagacttttttaaaac-aaaaaaatcttttaaaatcctttgaaatc 27593168  T
Q  101 tcaattcaatacaccccctaa 121  Q
    |||||| ||||||| ||||||    
T  27593167 tcaattgaatacactccctaa 27593147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 36786085 - 36785970
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  36786085 attgaatgccacaagaatgttttagattccttaaaagtcttgattgaatacctaaagacttttttaaaac-aaaaaagtcttttaaaatcctttaaaatc 36785987  T
Q  101 tcaattcaatacacccc 117  Q
    |||||| |||| |||||    
T  36785986 tcaattaaatatacccc 36785970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 39338267 - 39338383
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||| ||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||        |||||||||||| |||||||||    
T  39338267 attgaataacacaagaatattttagattccttaaaagtctttattgaatacctaaagacttttttaaaacaaaaaaaatcttttaaaatcttttaaaatc 39338366  T
Q  101 tcaattcaatacacccc 117  Q
    |||||| ||||||||||    
T  39338367 tcaattgaatacacccc 39338383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 19552118 - 19552235
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||| ||||||| | |||||||||||||  ||||||||| |||||         ||||||||||||||||||||||    
T  19552118 attgaataccacaagaatgttttacatttcttaaaaatcttgattgaataccacaagacttttataaaa-taaaaaaatcttttaaaatcctttaaaatc 19552216  T
Q  101 tcaattcaatacaccccct 119  Q
    ||||| |||||||||||||    
T  19552217 tcaatccaatacaccccct 19552235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 52024169 - 52024286
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||||||||  ||||||||||| |||         |||||||||||||||| |||||    
T  52024169 attgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagactttttttaaaacaaaaaagtcttttaaaatcctttgaaatc 52024268  T
Q  101 tcaattcaatacaccccc 118  Q
    ||||| |||| |||||||    
T  52024269 tcaatccaatgcaccccc 52024286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 36054977 - 36055093
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||| ||||||||| ||||||||||| | |||||||||||||  ||||||||| ||||||        |||||||||||||||| |||||    
T  36054977 attgaataccacaaaaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaac-aaaaaagtcttttaaaatcctttgaaatc 36055075  T
Q  101 tcaattcaatacaccccc 118  Q
    ||||| ||||||||||||    
T  36055076 tcaatccaatacaccccc 36055093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 26555928 - 26555811
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||| ||| ||||| ||||||||||| | |||||||||||||  ||||||||| ||||||        |||||||||||||||| |||||    
T  26555928 attgaataccacaataatattttacattccttaaaaatcttgattgaataccacaagacttttataaaac-aaaaaagtcttttaaaatcctttgaaatc 26555830  T
Q  101 tcaattcaatacaccccct 119  Q
    ||||| |||||||||||||    
T  26555829 tcaatccaatacaccccct 26555811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 30588953 - 30588836
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| |||| |||||| | |||||||||||||  ||||||||| ||||||        |||||||||||||||||||||     
T  30588953 attgaataccacaagaatgttttacattctttaaaaatcttgattgaataccacaagacttttataaaac-aaaaaagtcttttaaaatcctttaaaatt 30588855  T
Q  101 tcaattcaatacaccccct 119  Q
    |||||  ||||||||||||    
T  30588854 tcaatctaatacaccccct 30588836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 35731046 - 35730933
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||||||||||| | ||||||||||| |  ||||||||| ||||||        |||||||||||||||| |||||    
T  35731046 attgaataccacaagaatgttttacattccttaaaaatcttgattgaatatcacaagacttttataaaac-aaaaaaatcttttaaaatcctttgaaatc 35730948  T
Q  101 tcaattcaatacacc 115  Q
    ||||| |||||||||    
T  35730947 tcaatccaatacacc 35730933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 26293537 - 26293649
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||||||||  || |||||| ||||||        |||||||||||||||| ||||     
T  26293537 attgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaaaacttttataaaac-aaaaaagtcttttaaaatcctttgaaatt 26293635  T
Q  101 tcaattcaatacac 114  Q
    ||||||||||||||    
T  26293636 tcaattcaatacac 26293649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 24150802 - 24150917
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||||||||  |||| |||| ||||||        |||||||||||||||| |||||    
T  24150802 attgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagatttttataaaac-aaaaaaatcttttaaaatcctttgaaatc 24150900  T
Q  101 tcaattcaatacacccc 117  Q
    ||||| ||||| |||||    
T  24150901 tcaatccaatatacccc 24150917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 50900417 - 50900531
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| |||| |||||| | |||||||||||||  ||||||||| ||||||        |||||||||||||||| |||||    
T  50900417 attgaataccacaagaatgttttacattctttaaaaatcttgattgaataccacaagacttttataaaac-aaaaaagtcttttaaaatcctttgaaatc 50900515  T
Q  101 tcaattcaatacaccc 116  Q
    | ||| ||||||||||    
T  50900516 ttaatccaatacaccc 50900531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 26005953 - 26006073
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||||||| ||| | || ||||||||    ||||||||| ||||||        |||||||||||||||| |||||    
T  26005953 attgaataccacaagaatgttttacattcctttaaaatttttattgaatattacaagacttttataaaacaaaaaag-tcttttaaaatcctttgaaatc 26006051  T
Q  101 tcaattcaatacaccccctaat 122  Q
    ||||| ||||||||||||||||    
T  26006052 tcaatccaatacaccccctaat 26006073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 53184043 - 53184158
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||| |||||||||||||||  |||||||||| | |||||||||||||   |||||||||||||||        ||||||||||||| || |||||    
T  53184043 attgaatagcacaagaatgttttaccttccttaaaaatcttgattgaataccacgagacttttttaaaac-aaaaaaatcttttaaaatccattgaaatc 53184141  T
Q  101 tcaattcaatacacccc 117  Q
    ||||||||||| |||||    
T  53184142 tcaattcaatagacccc 53184158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 38629770 - 38629839
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaac 70  Q
    |||||||||||||| ||||||||| ||||||||||| | |||||||||||||  ||||||||| ||||||    
T  38629770 attgaataccacaaaaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaac 38629839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 13662662 - 13662546
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||| ||||||||||| |||||||| || | |||||||||||||   |||||||| ||||||        ||||||||||| |||| |||||    
T  13662662 attgaataccacgagaatgttttacattccttacaaatcttgattgaataccacgagacttttgtaaaac-aaaaaagtcttttaaaattctttgaaatc 13662564  T
Q  101 tcaattcaatacaccccc 118  Q
    ||||| ||||||||||||    
T  13662563 tcaatccaatacaccccc 13662546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 38682539 - 38682426
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||| ||| ||||| ||| ||||||| | |||||||||||||  |||| |||||||||||        |||||||||||||||| |||||    
T  38682539 attgaataccacaataat-ttttacatttcttaaaaatcttgattgaataccacaagatttttttaaaacaaaaaag-tcttttaaaatcctttgaaatc 38682442  T
Q  101 tcaattcaatacaccc 116  Q
    ||||| ||||||||||    
T  38682441 tcaatacaatacaccc 38682426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 46252173 - 46252292
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||| ||| ||||  ||||||||||| | || ||||||||||   |||||| ||||||||        |||||||||||| |||||||||    
T  46252173 attgaataccacaaaaatattttgcattccttaaaaatcttaattgaataccacgagacttgtttaaaacaaaaaaa-tcttttaaaatcatttaaaatc 46252271  T
Q  101 tcaattcaatacaccccctaa 121  Q
    ||||| ||||||| |||||||    
T  46252272 tcaatccaatacatcccctaa 46252292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 45926996 - 45927034
Alignment:
Q  79 tcttttaaaatcctttaaaatctcaattcaatacacccc 117  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  45926996 tcttttaaaatcctttaaaatctcaatccaatacacccc 45927034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 26107347 - 26107280
Alignment:
Q  2 ttgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    ||||||||||||||| | ||||  |||  | |||||| |||||||||||||| |||||||||||||||    
T  26107347 ttgaataccacaagactttttttaattgatgaaaagtcttgattgaatacctcaagacttttttaaaa 26107280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 43151196 - 43151154
Alignment:
Q  79 tcttttaaaatcctttaaaatctcaattcaatacaccccctaa 121  Q
    ||||||||||||||| |||||| |||||||||||| |||||||    
T  43151196 tcttttaaaatccttcaaaatcccaattcaatacatcccctaa 43151154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 10067731 - 10067768
Alignment:
Q  79 tcttttaaaatcctttaaaatctcaattcaatacaccc 116  Q
    ||||||||||||| || |||||||||||||||||||||    
T  10067731 tcttttaaaatcccttgaaatctcaattcaatacaccc 10067768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 85781 - 85745
Alignment:
Q  83 ttaaaatcctttaaaatctcaattcaatacaccccct 119  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  85781 ttaaaatcctttaaaatatcaattcaatagaccccct 85745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 10660590 - 10660554
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  10660590 aaaagtcttgattgaatacctcaagacttttttaaaa 10660554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 10728792 - 10728828
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  10728792 aaaagtcttgattgaatacctcaagacttttttaaaa 10728828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 11431581 - 11431545
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  11431581 aaaagtcttgattgaatacctcaagacttttttaaaa 11431545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 15493011 - 15493047
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  15493011 aaaagttttgattgaatacctcaagacttttttaaaa 15493047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 17946343 - 17946307
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  17946343 aaaagtcttgattgaatacctcaagacttttttaaaa 17946307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 18749625 - 18749589
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  18749625 aaaagttttgattgaatacctcaagacttttttaaaa 18749589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 23753537 - 23753573
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  23753537 aaaagtcttgattgaatacctcaagacttttttaaaa 23753573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 34484181 - 34484217
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  34484181 aaaagtcttgattgaatacctcaagacttttttaaaa 34484217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 36674281 - 36674317
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  36674281 aaaagtcttgattgaatacctcaagacttttttaaaa 36674317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 39038095 - 39038059
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  39038095 aaaagtcttgattgaatacctcaagacttttttaaaa 39038059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 40897199 - 40897163
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  40897199 aaaagtcttgattgaatacctcaagacttttttaaaa 40897163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 44906664 - 44906700
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  44906664 aaaagtcttgattgaatacctcaagacttttttaaaa 44906700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 50903394 - 50903430
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  50903394 aaaagtcttgattgaataccttaagacttttttaaaa 50903430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 52618116 - 52618152
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  52618116 aaaagtcttgattgaatacctcaagacttttttaaaa 52618152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 54628898 - 54628862
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  54628898 aaaagtcttgattgaatacctcaagacttttttaaaa 54628862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 40143890 - 40143774
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||| ||| |||||    
T  40143890 attgaataccacaagaatgttttagattccttaaaagtcttgattgaatacctaaagacttttttaaaac-aaaaaagtcttttaaaatcttttgaaatc 40143792  T
Q  101 tcaattcaatacaccccc 118  Q
    |||||| |||||||||||    
T  40143791 tcaattgaatacaccccc 40143774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 45332780 - 45332661
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||        ||||||||||| |||| |||||    
T  45332780 attgaataccacaagaatgttttagattccttaaaagttttgattgaatacctaaagacatttttaaaac-aaaaaagtcttttaaaattctttgaaatc 45332682  T
Q  101 tcaattcaatacaccccctaa 121  Q
    |||||| ||||||||||||||    
T  45332681 tcaattgaatacaccccctaa 45332661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 26336191 - 26336079
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||        |||||||||||||||| |||||    
T  26336191 attgaataccacaagaatgttttagattccttaaaagtcttgattgaatacctaaagacatttttaaaac-aaaaaagtcttttaaaatcctttgaaatc 26336093  T
Q  101 tcaattcaatacac 114  Q
    |||||| |||||||    
T  26336092 tcaattgaatacac 26336079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 54509828 - 54509713
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||||| |||||    
T  54509828 attgaatatcacaagaatattttagattccttaaaagtcttgattgaatacctaaagacttttttaaaac-aaaaaagtcttttaaaatcctttgaaatc 54509730  T
Q  101 tcaattcaatacacccc 117  Q
    |||||| ||||||||||    
T  54509729 tcaattgaatacacccc 54509713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 42720833 - 42720713
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||| ||||||||||        ||||||||||||||||||||||    
T  42720833 attgaataccacaagaatgttttagattacttaaaagttttgattaaatacctaaagacatttttaaaac-aaaaaagtcttttaaaatcctttaaaatc 42720735  T
Q  101 tcaattcaatacaccccctaat 122  Q
    |||||| |||  ||||||||||    
T  42720734 tcaattgaattaaccccctaat 42720713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 47685258 - 47685145
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||        |||||||||||| ||| |||||    
T  47685258 attgaataccacaaaaatgttttagattccttaaaagtcttgattgaatacctaaagatttttttaaaac-aaaaaagtcttttaaaatcttttgaaatc 47685160  T
Q  101 tcaattcaatacacc 115  Q
    |||||| ||||||||    
T  47685159 tcaattgaatacacc 47685145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 8583975 - 8584090
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||||||||  ||||||||| |||||         |||||||||||||||| |||||    
T  8583975 attgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaa-taaaaaagtcttttaaaatcctttgaaatc 8584073  T
Q  101 tcaattcaatacacccc 117  Q
    ||||| |||||||||||    
T  8584074 tcaatccaatacacccc 8584090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 25935901 - 25935781
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||| ||||||||||||||| ||||||||||| | |||||||||||||  || |||||| |||||         |||||||||||||||| |||||    
T  25935901 attgaatatcacaagaatgttttacattccttaaaaatcttgattgaataccataaaacttttataaaataaaaaaagtcttttaaaatcctttgaaatc 25935802  T
Q  101 tcaattcaatacaccccctaa 121  Q
    ||||| |||||||||||||||    
T  25935801 tcaatccaatacaccccctaa 25935781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 44929991 - 44929872
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||| ||||| ||||||||||| | |||||||||||||  ||||||||| ||||||        | |||||||||| |||||||||    
T  44929991 attgaataccacaagaatattttatattccttaaaaatcttgattgaataccacaagacttttataaaac-aaaaaagtattttaaaatcttttaaaatc 44929893  T
Q  101 tcaattcaatacaccccctaa 121  Q
    ||||| |||||||||||||||    
T  44929892 tcaatccaatacaccccctaa 44929872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 52109520 - 52109451
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaac 70  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||||||||  |||| |||| ||||||    
T  52109520 attgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagatttttataaaac 52109451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 3435927 - 3436038
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||| ||||||| ||||||||||| | |||||||||||||     |||||| ||||||        ||||||||||||||||||||||    
T  3435927 attgaataccacaagattgttttacattccttaaaattcttgattgaatacc-----acttttataaaac-aaaaaagtcttttaaaatcctttaaaatc 3436020  T
Q  101 tcaattcaatacaccccc 118  Q
    ||||| ||||| ||||||    
T  3436021 tcaatccaataaaccccc 3436038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 7820210 - 7820091
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||| ||||||||||||||||| ||| | ||||| |||||||  || |||||| ||||||        |||||||||||| ||| |||||    
T  7820210 attgaataccacaaaaatgttttagattccttgaaaattttgatggaataccacaaaacttttataaaac-aaataagtcttttaaaatcatttgaaatc 7820112  T
Q  101 tcaattcaatacaccccctaa 121  Q
    ||||| ||||| |||||||||    
T  7820111 tcaatccaatataccccctaa 7820091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45340470 - 45340433
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45340470 attgaataccacaagaatgttttagattccttaaaagt 45340433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 28847149 - 28847191
Alignment:
Q  79 tcttttaaaatcctttaaaatctcaattcaatacaccccctaa 121  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  28847149 tcttttaaaatcctttaaaatctcaatccaatacatcccctaa 28847191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 41762016 - 41761978
Alignment:
Q  79 tcttttaaaatcctttaaaatctcaattcaatacacccc 117  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  41762016 tcttttaaaatcctttaaaatctcaatccaatacacccc 41761978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 8880558 - 8880442
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgatt-gaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaat 99  Q
    |||||||||||||||||||||||| ||||||||||| | || ||| |||||||  |||| |||| ||||||        |||||||||||||||| ||||    
T  8880558 attgaataccacaagaatgttttacattccttaaaaatcttaattggaataccacaagatttttataaaac-aaaaaagtcttttaaaatcctttgaaat 8880460  T
Q  100 ctcaattcaatacaccccc 118  Q
    || ||| ||||||||||||    
T  8880459 ct-aatccaatacaccccc 8880442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 56397476 - 56397440
Alignment:
Q  83 ttaaaatcctttaaaatctcaattcaatacaccccct 119  Q
    |||||||||||| ||||||||||||||||||||||||    
T  56397476 ttaaaatcctttgaaatctcaattcaatacaccccct 56397440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 35261652 - 35261614
Alignment:
Q  79 tcttttaaaatcctttaaaatctcaattcaatacacccc 117  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  35261652 tcttttaaaatcctttgaaatctcaatccaatacacccc 35261614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 42218453 - 42218490
Alignment:
Q  81 ttttaaaatcctttaaaatctcaattcaatacaccccc 118  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  42218453 ttttaaaatcctttgaaatctcaatccaatacaccccc 42218490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 5441459 - 5441423
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  5441459 aaaagtcttgattgaatacctcaagacttttttaaaa 5441423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 23987269 - 23987233
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  23987269 aaaagttttgattgaatacctcaagacttttttaaaa 23987233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 27768111 - 27768075
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  27768111 aaaagtcttgattgaatacctcaagacttttttaaaa 27768075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 29649818 - 29649854
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  29649818 aaaagtcttgattgaatacctcaagacttttttaaaa 29649854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 37915882 - 37915846
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  37915882 aaaagtcttgattgaatacctcaagacttttttaaaa 37915846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 51320976 - 51320940
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  51320976 aaaagtcttgattgaatacctcaagacttttttaaaa 51320940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 54341199 - 54341163
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  54341199 aaaagtcttgattgaatacctcaagacttttttaaaa 54341163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 30382644 - 30382761
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||        |||||||||||||||| |||||    
T  30382644 attgaataccacaagaatgttttagattccttagaagtcttgattgaatacctaaagactttttaaaaac-aaaaaagtcttttaaaatcctttgaaatc 30382742  T
Q  101 tcaattcaatacaccccct 119  Q
    |||||| ||||||||||||    
T  30382743 tcaattgaatacaccccct 30382761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 37567333 - 37567450
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||        |||||||||||| ||| |||||    
T  37567333 attgaataccacaagaatgttttagattccttaaaagtcttaattgaatacctaaagacttttttaaaac-aaaaaaatcttttaaaatcttttgaaatc 37567431  T
Q  101 tcaattcaatacaccccct 119  Q
    |||||| ||||||||||||    
T  37567432 tcaattgaatacaccccct 37567450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 9209150 - 9209035
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||| ||||||||||||||||||||||| |||||| |||||||||| |||||||||||||        ||||||||||| |||| |||||    
T  9209150 attgaataccacaaaaatgttttagattccttaaaagtcttgattcaatacctaaatacttttttaaaac-aaaaaagtcttttaaaattctttgaaatc 9209052  T
Q  101 tcaattcaatacacccc 117  Q
    |||||||||||||||||    
T  9209051 tcaattcaatacacccc 9209035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 4302778 - 4302847
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaac 70  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  4302778 attgaataccacaagaatgttttagattccttaacagtcttgattgaatacctaaagacttttttaaaac 4302847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 1605983 - 1606103
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||||||||  ||||||||| ||||||        |||||||||||||||| |||||    
T  1605983 attgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaac-aaaaaagtcttttaaaatcctttgaaatc 1606081  T
Q  101 tcaattcaatacaccccctaat 122  Q
    ||||| ||||||||||||||||    
T  1606082 tcaatccaatacaccccctaat 1606103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 29260246 - 29260365
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||| ||||||||||||||| ||||||||||| | |||||||||||||  ||||||||| ||||||        ||||||||||||||||||||||    
T  29260246 attgaatatcacaagaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaac-aaaaaagtcttttaaaatcctttaaaatc 29260344  T
Q  101 tcaattcaatacaccccctaa 121  Q
    ||||| |||||||||||||||    
T  29260345 tcaatccaatacaccccctaa 29260365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 42275086 - 42274968
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||||||||  ||||||||| ||||||        |||||||||||||||| |||||    
T  42275086 attgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaac-aaaaaaatcttttaaaatcctttgaaatc 42274988  T
Q  101 tcaattcaatacacccccta 120  Q
    ||||| ||||||||||||||    
T  42274987 tcaatccaatacacccccta 42274968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 35142156 - 35142041
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||| ||||||||| ||||||||||| | |||||||||||||  ||||||||||||||||        ||||||||||||| ||||||||    
T  35142156 attgaataccacaaaaatgttttacattccttaaaaattttgattgaataccacaagacttttttaaaac-gaaaaagtcttttaaaatccattaaaatc 35142058  T
Q  101 tcaattcaatacacccc 117  Q
    ||||| |||||||||||    
T  35142057 tcaatccaatacacccc 35142041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 2112905 - 2112791
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||||||||  ||||||||| ||||||        |||||||||||||||| |||||    
T  2112905 attgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaac-aaaaaagtcttttaaaatcctttgaaatc 2112807  T
Q  101 tcaattcaatacaccc 116  Q
    ||||| ||||||||||    
T  2112806 tcaatccaatacaccc 2112791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 43605334 - 43605449
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||||||||  ||||||||| ||||||        |||||||||||||||| |||||    
T  43605334 attgaataccacaagaatgttttacattccttaaaaatcttgattgaataccacaagacttttataaaac-aaaaaagtcttttaaaatcctttgaaatc 43605432  T
Q  101 tcaattcaatacacccc 117  Q
    ||||| |||||| ||||    
T  43605433 tcaatccaatacccccc 43605449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 40265251 - 40265367
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||||||||||| | ||||||||||| |  ||||||||| ||||||        |||||||||||||||| ||||     
T  40265251 attgaataccacaagaatgttttacattccttaaaaatcttgattgaatatcacaagacttttataaaac-aaaaaagtcttttaaaatcctttgaaatt 40265349  T
Q  101 tcaattcaatacaccccc 118  Q
    ||||| ||||||||||||    
T  40265350 tcaatccaatacaccccc 40265367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 41386840 - 41386956
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||| |||||| || ||||||||||| | |||||||||||||  ||||||||| ||||||        |||||||||||| ||| |||||    
T  41386840 attgaataccacaacaatgttatacattccttaaaaatcttgattgaataccacaagacttttataaaacaaaaaaaatcttttaaaatcttttgaaatc 41386939  T
Q  101 tcaattcaatacacccc 117  Q
    ||||| |||||||||||    
T  41386940 tcaatccaatacacccc 41386956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 9457655 - 9457541
Alignment:
Q  3 tgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatctc 102  Q
    |||||||||||||||||||||| ||||||| ||| | |||||||||||||  ||||||||| ||||||        |||||||||||||||| |||||||    
T  9457655 tgaataccacaagaatgttttacattccttcaaaatcttgattgaataccacaagacttttataaaac-aaaaatgtcttttaaaatcctttgaaatctc 9457557  T
Q  103 aattcaatacaccccc 118  Q
    |||  |||||||||||    
T  9457556 aatcgaatacaccccc 9457541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 28619957 - 28619843
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||||||||||| | || ||||||||||  || |||||| ||||||        |||||||||||||||| |||||    
T  28619957 attgaataccacaagaatgttttacattccttaaaaatcttaattgaataccacaaaacttttataaaac-aaaaaagtcttttaaaatcctttgaaatc 28619859  T
Q  101 tcaattcaatacaccc 116  Q
    ||||| ||||||||||    
T  28619858 tcaatccaatacaccc 28619843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 4655161 - 4655044
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||||||||||| | |||||| ||||||  ||||||||| | ||||        ||||||||||| |||| |||||    
T  4655161 attgaataccacaagaatgttttacattccttaaaaatcttgattaaataccacaagacttttattaaac-aaaaaaatcttttaaaattctttgaaatc 4655063  T
Q  101 tcaattcaatacaccccct 119  Q
    ||||| |||||||||||||    
T  4655062 tcaatccaatacaccccct 4655044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 10802741 - 10802858
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    ||||||||| |||||||||||||| |||  |||||| | |||||||||||||  ||||||||| |||||         |||||||||||  ||| |||||    
T  10802741 attgaatactacaagaatgttttacattttttaaaaatcttgattgaataccagaagacttttataaaa-taaaaaagtcttttaaaattatttgaaatc 10802839  T
Q  101 tcaattcaatacaccccct 119  Q
    |||||||||||||||||||    
T  10802840 tcaattcaatacaccccct 10802858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 8502746 - 8502676
Alignment:
Q  1 attgaataccacaagaatgttttagatt-ccttaaaagtattgattgaatacctaaagacttttttaaaac 70  Q
    |||||||||||||||||||||||| ||| |||||||| | || ||| ||||||  ||||||||||||||||    
T  8502746 attgaataccacaagaatgttttacattcccttaaaaatcttaattaaataccacaagacttttttaaaac 8502676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 40013446 - 40013555
Alignment:
Q  5 aataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatctcaa 104  Q
    ||||||||| |||||||||| ||||||||||| | ||||||||||||  | | |||||||||||||        ||||||||||| |||| ||||||| |    
T  40013446 aataccacatgaatgttttacattccttaaaaattttgattgaatac--acaaacttttttaaaac-aaaaaagtcttttaaaattctttgaaatctcca 40013542  T
Q  105 ttcaatacacccc 117  Q
    | |||||||||||    
T  40013543 tccaatacacccc 40013555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 4031377 - 4031444
Alignment:
Q  2 ttgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    ||||||||||||||| | ||||  |||  | |||||| |||||||||||||| |||||||||||||||    
T  4031377 ttgaataccacaagactttttttaatttatgaaaagtcttgattgaatacctcaagacttttttaaaa 4031444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 7466391 - 7466355
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  7466391 aaaagtcttgattgaatacctcaagacttttttaaaa 7466355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 14782285 - 14782321
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  14782285 aaaagtcttgattgaatacctcaagacttttttaaaa 14782321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 16362252 - 16362216
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  16362252 aaaagtcttgattgaatacctcaagacttttttaaaa 16362216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 18306111 - 18306147
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  18306111 aaaagtcttgattgaatacctcaagacttttttaaaa 18306147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 18958877 - 18958913
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  18958877 aaaagtcttgattgaatacctcaagacttttttaaaa 18958913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 19718031 - 19718067
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  19718031 aaaagtcttgattgaatacctcaagacttttttaaaa 19718067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 31623751 - 31623715
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  31623751 aaaagtcttgattgaatacctcaagacttttttaaaa 31623715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 32497581 - 32497545
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  32497581 aaaagtcttgattgaatacctcaagacttttttaaaa 32497545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 39467618 - 39467654
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  39467618 aaaagtcttgattgaatacctcaagacttttttaaaa 39467654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 42305935 - 42305971
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  42305935 aaaagtcttgattgaatacctcaagacttttttaaaa 42305971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 44725960 - 44725996
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  44725960 aaaagtcttgattgaatacctcaagacttttttaaaa 44725996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 30877966 - 30877850
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||||| |||||    
T  30877966 attgaatatcacaagaatattttagattccttaaaagtcttgattgaatacctaaagacttttttaaaac-aaaaaagtcttttaaaatcctttgaaatc 30877868  T
Q  101 tcaattcaatacaccccc 118  Q
    |||||| |||||||||||    
T  30877867 tcaattgaatacaccccc 30877850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 10643984 - 10644099
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||  ||| |||||    
T  10643984 attgaataccacaagaatgttttagattccttaaaagtcttgattgaatacctaaagacttttttaaaac-aaaaaagtcttttaaaatattttgaaatc 10644082  T
Q  101 tcaattcaatacacccc 117  Q
    |||||| ||||||||||    
T  10644083 tcaattgaatacacccc 10644099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 29834255 - 29834371
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||| ||||||||||||||||||| ||||||| ||| | |||||||||||||  ||||||||| ||||||        |||||||||||||||| |||||    
T  29834255 attgcataccacaagaatgttttacattccttcaaaatcttgattgaataccacaagacttttataaaac-aaaaatgtcttttaaaatcctttgaaatc 29834353  T
Q  101 tcaattcaatacaccccc 118  Q
    |||||  |||||||||||    
T  29834354 tcaatcgaatacaccccc 29834371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 29865689 - 29865805
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||| ||||||||||||||||||| ||||||| ||| | |||||||||||||  ||||||||| ||||||        |||||||||||||||| |||||    
T  29865689 attgcataccacaagaatgttttacattccttcaaaatcttgattgaataccacaagacttttataaaac-aaaaatgtcttttaaaatcctttgaaatc 29865787  T
Q  101 tcaattcaatacaccccc 118  Q
    |||||  |||||||||||    
T  29865788 tcaatcgaatacaccccc 29865805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 7858344 - 7858457
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||||||||||||| ||||||| ||| | ||||||||| ||| | | |||||||||||||        | |||||||||| | | |||||    
T  7858344 attgaataccacaagaatgttttacattcctttaaaatcttgattgaacacc-acaaacttttttaaaac-aaaaaaatattttaaaatcatatgaaatc 7858441  T
Q  101 tcaattcaatacaccc 116  Q
    ||||||||||||||||    
T  7858442 tcaattcaatacaccc 7858457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 3110255 - 3110324
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaac 70  Q
    |||||||||||||| ||||||||| ||||||||||| |  ||||||||||||  |||| |||| ||||||    
T  3110255 attgaataccacaaaaatgttttacattccttaaaaattatgattgaataccataagatttttataaaac 3110324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 6476683 - 6476800
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||||||||| ||||||||| ||| ||||||| | || |||||||||   ||||||||| ||||||        ||||||||||||| || ||||     
T  6476683 attgaataccacaaaaatgttttacatttcttaaaaatcttaattgaatactgcaagacttttataaaac-aaaacagtcttttaaaatccattgaaatt 6476781  T
Q  101 tcaattcaatacaccccct 119  Q
    ||||| |||||||||||||    
T  6476782 tcaatccaatacaccccct 6476800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 5957163 - 5957121
Alignment:
Q  79 tcttttaaaatcctttaaaatctcaattcaatacaccccctaa 121  Q
    ||||||||||||| || || |||||||||||||||||||||||    
T  5957163 tcttttaaaatcccttgaattctcaattcaatacaccccctaa 5957121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 34773464 - 34773428
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  34773464 aaaagtcttgattgaatacctcaagacttttttaaaa 34773428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 81752 - 81868
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||||||| ||||||||||||||||||||||||||| | |||||||||||||  ||||||||| ||||||        ||||||||||||||||||||||    
T  81752 attgaatagcacaagaatgttttagattccttaaaaatcttgattgaataccacaagacttttataaaac-aaaaaagtcttttaaaatcctttaaaatc 81850  T
Q  101 tcaattcaatacaccccc 118  Q
    ||||| ||||||||||||    
T  81851 tcaatccaatacaccccc 81868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 34780 - 34889
Alignment:
Q  9 ccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatctcaattca 108  Q
    |||||||||||||||| ||||||||||| | ||||||||||||  || ||||||| ||||||        | ||||||||||||||||||||||||| ||    
T  34780 ccacaagaatgttttacattccttaaaaatcttgattgaatacacaa-gacttttataaaacaaaaaaagtattttaaaatcctttaaaatctcaatcca 34878  T
Q  109 atacaccccct 119  Q
    |||||||||||    
T  34879 atacaccccct 34889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 21383 - 21499
Alignment:
Q  1 attgaataccacaagaatgttttagattccttaaaagtattgattgaatacctaaagacttttttaaaacnnnnnnnntcttttaaaatcctttaaaatc 100  Q
    |||| ||||||||||||||||||| ||||||| ||| | |||||||||||||  ||||||||| ||||||        |||||||||||||||| |||||    
T  21383 attgcataccacaagaatgttttacattccttcaaaatcttgattgaataccacaagacttttataaaac-aaaaatgtcttttaaaatcctttgaaatc 21481  T
Q  101 tcaattcaatacaccccc 118  Q
    |||||  |||||||||||    
T  21482 tcaatcgaatacaccccc 21499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 4256 - 4220
Alignment:
Q  33 aaaagtattgattgaatacctaaagacttttttaaaa 69  Q
    |||||| |||||||||||||| |||||||||||||||    
T  4256 aaaagtcttgattgaatacctcaagacttttttaaaa 4220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 16512 - 16583
Alignment:
Q  1 attgaataccacaagaatgttttagattcctt--aaaagtattgattgaatacctaaagacttttttaaaac 70  Q
    |||||||||||||| ||||||||| ||| |||  |||| | |||||| ||||||  ||||||||||||||||    
T  16512 attgaataccacaaaaatgttttacatttcttaaaaaaatcttgattaaataccacaagacttttttaaaac 16583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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