View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11030_low_3 (Length: 550)
Name: NF11030_low_3
Description: NF11030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11030_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 17 - 532
Target Start/End: Complemental strand, 48819506 - 48818986
Alignment:
| Q |
17 |
cacagagagagcattgacttctatgaagacaagggaaaccaaaaaacagaagagggagagcgcagagaaccgtgtacaagaattnnnnnnnn---cacca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | ||||| |
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| T |
48819506 |
cacagagagagcattgacttctatgaagacaagggaaaccaaaaaacagaagagggagggcgcagagtaccgtgtacaagaacttaaaaaaaaaacacca |
48819407 |
T |
|
| Q |
114 |
aaggaggtagtcgcgaccaaaaacgcaatatgctagggttgtgtttatgattctgactagggttattttgagggtttactttcagttatttctatcccat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48819406 |
aaggaggtagtcgcgaccaaaaacgcaatatgctagggttgtgtttatgattctgactagggttattttgagggtttactttcagttatttctatcccat |
48819307 |
T |
|
| Q |
214 |
tcaaggaaaatattgcaacaaaaaacttcgattttgatccggatcgctttacccgacccatttatggcttcacctgcaatcacagattttcgcacctctg |
313 |
Q |
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| T |
48819306 |
tcaaggaaaatattgcaactaaaaacttcgattttgatccggatcgctttacccggcccatttatggcttcacctgcaatcacagattttcgcgcctctg |
48819207 |
T |
|
| Q |
314 |
ttccttttttccatttctgaatcatgcagtgcattccata--tgtgactcggcagatataatcgcaactcaatttgcaattcatatgagaaatcaattca |
411 |
Q |
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||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48819206 |
ttcctttttcccatttctgaatcatacagtgcattccatatctgtgactcggcagatataatcgcaactcaatttgcaattcatatgagaaatcaattca |
48819107 |
T |
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| Q |
412 |
acctgtgattcatattggagggattccattttgttttgtgtcggaatatgatatgtagaatacgaactacaggaatatgcattacagacagccaaaaaca |
511 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48819106 |
acctgcgattcatatcggagggattccattttgttttgtgtcggaatatgatatgtagaatacgaactacaggaatatgcattacagacagccaaaaaca |
48819007 |
T |
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| Q |
512 |
atgttaagaatgttccatatt |
532 |
Q |
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||||||||||||||||||||| |
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| T |
48819006 |
atgttaagaatgttccatatt |
48818986 |
T |
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